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Biomedical subjects

Jiang Du

Publications and source records attributed to Jiang Du.

At least 19 recordsLinked to original sources

PSMA6 drives non-small cell lung cancer progression by stabilizing NEDD8 and activating NF-κB signaling.

BACKGROUND: Non‑small cell lung cancer (NSCLC) is a major cause of cancer‑associated death globally. Elucidating novel molecular drivers is essential for targeted therapy development. This study sought to investigate the function and regulatory mechanism of proteasome 20S subunit alpha 6 (PSMA6) in NSCLC. METHODS: Proteasome 20S subunit alpha 6 (PSMA6) expression in NSCLC tissues and cells was analyzed using The Cancer Genome Atlas (TCGA) datasets, immunohistochemistry, and Western blotting. Gain- and loss-of-function assays were performed to evaluate its biological functions. Protein interaction assays and functional rescue experiments were conducted to investigate the underlying mechanisms. RESULTS: We found that PSMA6 was significantly upregulated in NSCLC tissues and cell lines and was associated with poor patient prognosis. Functional experiments demonstrated that PSMA6 promoted NSCLC cell proliferation and migration. Mechanistically, PSMA6 activated nuclear factor kappa B (NF-κB) signaling by enhancing p65 nuclear translocation and IκBα phosphorylation. Further investigation revealed that PSMA6 directly interacted with neural precursor cell expressed, developmentally down-regulated 8 (NEDD8) and increased its protein stability without affecting its mRNA level. Importantly, NEDD8 knockdown abolished PSMA6-induced NF-κB activation and malignant phenotypes, confirming that PSMA6 exerts its oncogenic effects through the NEDD8/NF-κB axis. CONCLUSIONS: Our findings identify a novel PSMA6/NEDD8/NF-κB regulatory axis that promotes NSCLC progression and suggest PSMA6 as a potential therapeutic target.

Proteasome 20S subunit alpha 6 (PSMA6)↗

Assessing the performance of different high-density tiling microarray strategies for mapping transcribed regions of the human genome.

Genomic tiling microarrays have become a popular tool for interrogating the transcriptional activity of large regions of the genome in an unbiased fashion. There are several key parameters associated with each tiling experiment (e.g., experimental protocols and genomic tiling density). Here, we assess the role of these parameters as they are manifest in different tiling-array platforms used for transcription mapping. First, we analyze how a number of published tiling-array experiments agree with established gene annotation on human chromosome 22. We observe that the transcription detected from high-density arrays correlates substantially better with annotation than that from other array types. Next, we analyze the transcription-mapping performance of the two main high-density oligonucleotide array platforms in the ENCODE regions of the human genome. We hybridize identical biological samples and develop several ways of scoring the arrays and segmenting the genome into transcribed and nontranscribed regions, with the aim of making the platforms most comparable to each other. Finally, we develop a platform comparison approach based on agreement with known annotation. Overall, we find that the performance improves with more data points per locus, coupled with statistical scoring approaches that properly take advantage of this, where this larger number of data points arises from higher genomic tiling density and the use of replicate arrays and mismatches. While we do find significant differences in the performance of the two high-density platforms, we also find that they complement each other to some extent. Finally, our experiments reveal a significant amount of novel transcription outside of known genes, and an appreciable sample of this was validated by independent experiments.

Cell Line↗

A supervised hidden markov model framework for efficiently segmenting tiling array data in transcriptional and chIP-chip experiments: systematically incorporating validated biological knowledge.

MOTIVATION: Large-scale tiling array experiments are becoming increasingly common in genomics. In particular, the ENCODE project requires the consistent segmentation of many different tiling array datasets into 'active regions' (e.g. finding transfrags from transcriptional data and putative binding sites from ChIP-chip experiments). Previously, such segmentation was done in an unsupervised fashion mainly based on characteristics of the signal distribution in the tiling array data itself. Here we propose a supervised framework for doing this. It has the advantage of explicitly incorporating validated biological knowledge into the model and allowing for formal training and testing. METHODOLOGY: In particular, we use a hidden Markov model (HMM) framework, which is capable of explicitly modeling the dependency between neighboring probes and whose extended version (the generalized HMM) also allows explicit description of state duration density. We introduce a formal definition of the tiling-array analysis problem, and explain how we can use this to describe sampling small genomic regions for experimental validation to build up a gold-standard set for training and testing. We then describe various ideal and practical sampling strategies (e.g. maximizing signal entropy within a selected region versus using gene annotation or known promoters as positives for transcription or ChIP-chip data, respectively). RESULTS: For the practical sampling and training strategies, we show how the size and noise in the validated training data affects the performance of an HMM applied to the ENCODE transcriptional and ChIP-chip experiments. In particular, we show that the HMM framework is able to efficiently process tiling array data as well as or better than previous approaches. For the idealized sampling strategies, we show how we can assess their performance in a simulation framework and how a maximum entropy approach, which samples sub-regions with very different signal intensities, gives the maximally performing gold-standard. This latter result has strong implications for the optimum way medium-scale validation experiments should be carried out to verify the results of the genome-scale tiling array experiments.

Artificial Intelligence↗

Noise reduction in multiple-echo data sets using singular value decomposition.

A method is described for denoising multiple-echo data sets using singular value decomposition (SVD). Images are acquired using a multiple gradient- or spin-echo sequence, and the variation of the signal with echo time (TE) in all pixels is subjected to SVD analysis to determine the components of the signal variation. The least significant components are associated with small singular values and tend to characterize the noise variation. Applying a "minimum variance" filter to the singular values suppresses the noise components in a way that optimally approximates the underlying noise-free images. The result is a reduction in noise in the individual TE images with minimal degradation of the spatial resolution and contrast. Phantom and in vivo results are presented.

Artifacts↗

Dynamic MR venography: an intrinsic benefit of time-resolved MR angiography.

PURPOSE: To investigate the possibility of obtaining dynamic contrast-enhanced magnetic resonance venography (DCE-MRV) images of the lower extremities. MATERIALS AND METHODS: Peripheral contrast-enhanced magnetic resonance angiography (CE-MRA) was performed on 20 patients using a time-resolved sequence that combined undersampled projection reconstruction (PR) in-plane and Cartesian slice encoding through-plane. The contrast dynamics of distal vessels were depicted. An automated segmentation algorithm based on a contrast arrival time (CAT) threshold was used to generate contrast dynamics in the venous system. The signal difference between the vein and artery was measured to evaluate the effectiveness of this technique in isolating the venous contrast dynamics. RESULTS: The automatically generated image series depicted the contrast dynamics of both the arterial and venous systems, including asymmetric venous enhancement and background tissue enhancement. Quantitative measurement showed a mean venous/arterial signal ratio increase from 1.58 to 4.82 for the peak venous frame after arterial signal suppression. CONCLUSION: DCE-MRV is a minimally invasive technique for evaluating the venous side of the systemic vascular anatomy. Time-resolved MRA has the potential clinical benefit of enabling both arterial and venous disease to be detected in patients undergoing CE-MRA.

Contrast Media↗

HIV sexual risk behaviors among injection drug users in Shanghai.

PURPOSE: This study investigated the sexual risk behaviors among injection drug users. (IDUs) in order to inform the development of sexual risk reduction interventions for IDUs. METHODS: A cross-sectional survey of IDUs (n=141) was conducted in an in-patient detoxification treatment center in Shanghai, China, to collect information on demographics; drug use history; sexual risk behavior; HIV/AIDS knowledge, attitudes, and other psychosocial variables; and HIV, HBV, and HCV seroprevalence. Factors associated with HIV sexual risk behaviors and HBV and/or HCV infection were analyzed. RESULTS: Sexual risk behaviors among IDUs were common: the majority (77%) of the participants had not used a condon consistently in the previous 3 months, 25.5% had multiple partners, 48.2% had IDU partners, and 75.9% did not know their partner's HIV status. IDUs who were married (OR=4.83, p<0.05) or did not intent to use condoms in the future (OR=0.21, p<0.05) were more likely to have unprotected sex. The prevalence of HBV and HCV infection was 31.9% and 51.8%, respectively, but no one tested positive for HIV.IDUs with an injection history of 3 years or more (OR=5.86, p<0.05) and with an overdose history (OR=3.21, p<0.05) were more likely to be infected with HBV and/or HCV. CONCLUSIONS: Sexual risk behaviors among IDUs in Shanghai are common, and many IDUs are vulnerable for transmission of disease. Prevention efforts with IDUs should address sexual risk behaviors in addition to needle-sharing behaviors.

Adult↗

Antineoplastic Agents. 554. The manitoba bacterium Streptomyces sp.

A Streptomyces sp. isolated from riverbank soil in Manitoba, Canada, was found to contain two cancer cell growth inhibitories: diazaanthraquinone 1 and 3-(hydroxyacetyl)indole (8). The structures were determined by interpretation of data from HRMS, UV, and high-field (400 MHz) NMR experiments. The red-colored diazaanthraquinone 1 and 3-(hydroxyacetyl)indole (8) were found to inhibit (0.1-3 microg/mL) growth of a minipanel of human cancer cell lines and P388 lymphocytic leukemia cells. Diazaanthraquinone 1 was also found to inhibit growth of the bacteria Streptococcus pneumoniae and Neisseria gonorrheae. However, three companion constituents, cyclo-Pro-Leu (5), cyclo-Pro-Phe (6), and cyclo-Pro-Val (7), did not inhibit cancer cell growth.

Amino Acid Sequence↗

[Temporal expression of thyroid transcription factor-1 in fetal and neonatal human lungs].

OBJECTIVE: Recent progress in developmental biology has shown that the thyroid transcription factor-1 (TTF-1) plays an important role in lung development. The aim of this study was to investigate the expression and distribution of TTF-1 and its function during the development of epithelial stem cells in fetal human lungs. METHODS: Human lung tissues were obtained with parental consent from 32 fetuses (10-27 weeks) and from seven newborn infants (28-36 weeks) who had not died from pulmonary diseases. The expression of TTF-1 was examined by immunohistochemistry. RESULTS: TTF-1 was expressed in the nuclei of columnar nonciliated epithelial cells of the fetal human lung as early as 10 weeks of gestation. With the development of bronchus TTF-1 positive cells were present in scattered nonciliated cells and were predominantly expressed in the nuclei of epithelial cells of the distal tubules and lung buds. By the late phase of fetal development or neonatal period, TTF-1 was expressed in only type II alveolar epithelium cells and their precursor cells but was absent in ciliated cells and type I alveolar epithelium cells. CONCLUSIONS: TTF-1 can stimulate the growth of both bronchial trees and alveolar cells and regulate the type II alveolar epithelium cells and their precursors to secret surfactants.

Epithelial Cells↗

[Effect of lethal hyperoxia on pulmonary development and lung injury in neonatal rats].

OBJECTIVE: To study the effect of oxygen at lethal levels (95%) on pulmonary development and lung injury in neonatal rats and establish rat models of bronchopulmonary dysplasia. METHODS: Three-day-old and adult SD rats were assigned to experimental or control groups and subjected to 95% O(2) exposure and room air for 7 days. Body weight and length of the rats were recorded, and histological study of the lung tissue and radical alveoli count (RAC) were carried out. RESULTS: The mortality rate of the neonatal and adult rats was 12.5% and 35.2% in hyperoxia group, respectively. The newborn rats in hyperoxic group had lower body weight (18.02-/+0.68 vs 13.24-/+0.59 g) and length (8.83-/+0.25 vs 6.76-/+0.51 cm) than those in the control group (P<0.05), with also lower RAC (9.50-/+1.05 vs 13.00-/+1.79, P<0.05); RAC of the adult rats with hyperoxic exposure (12.67-/+2.25) was higher that of exposed neonatal rats, but not significantly different from that of the adult or neonatal rats in the control group (P>0.05). Structure configuration of the rats on the first 10 days of life resembled that of adulthood. The lung of hyperoxic neonatal rats showed thinner walls of alveoli, simple alveolar structure, fewer and larger alveoli, expanded and shrunk alveoli, while the lung of the adult rats displayed thicker septa, smaller space of alveoli, and cells in the space of the alveoli. CONCLUSION: Exposure of neonatal rats to 95% O(2) may result in mild pulmonary inflammation in addition to growth impediment and impaired lung development, which shares morphologic similarities to human bronchopulmonary dysplasia.

Animals↗

[Surfactant protein B expression and its role in the development of human fetal lung epithelial cells].

OBJECTIVE: To investigate the expression patterns of surfactant protein B (SP-B) and its role in the development of human fatal lung epithelial cells. METHODS: Human fetal lung tissues were obtained from 37 fetuses of 10-34 weeks at abortion with parental consent and from two newborn infants who died of non-pulmonary causes. SP-B expression in the lung tissues was examined by immunohistochemistry. RESULTS: SP-B was detected in the cytoplasm of nonciliated columnar epithelial cells of the human fetal lung in as early as the 16th week of gestation. The positive reaction of SP-B was enhanced during canalicular stages and was more intense in the distal than in the proximal airway epithelium. From the 25th week to the prenatal stage, SP-B expression underwent no significant changes in the primitive alveolar stage, but increased remarkably after birth. CONCLUSION: The expression and secretion of SP-B reflects the maturation of the epithelial cells in human fatal lungs, and may closely associate with the survival ability of the newborn infants.

Cell Survival↗

Time-resolved undersampled projection reconstruction magnetic resonance imaging of the peripheral vessels using multi-echo acquisition.

The hybrid projection reconstruction (PR) imaging provides high temporal resolution through an undersampled PR acquisition for the in-plane dimensions and Cartesian slice encoding for the through-plane dimension. The undersampling of projection data introduces streak artifact, which may severely compromise image quality. This study reports on a combination of multi-echo acquisition with time-resolved undersampled PR imaging and its application to peripheral magnetic resonance angiography. Multi-echo acquisition improved imaging speed effectively, thereby reducing the undersampling streak artifact and improving the temporal resolution. The gradient distortion was reduced through gradient calibration and accurate k-space trajectory measurement.

Artifacts↗

[Pathogenic and clinicopathologic study of invative mycosis in nose and paranasal sinus].

OBJECTIVE: To investigate the mechanism of fungi invasion into the mucosal tissue, and to analyse the clinical-pathological relationship. METHODS: The clinical data of 16 patients with invasive mycosis in the nose and paranasal sinus proved by pathologic examination between Apr, 1984 and Aug, 2002 were reviewed retrospectively. There were 7 males and 9 females with an average age of 48.6 years. The pathologic morphology of fungi found in these patients was investigated. Fourteen of 16 tissue samples from the paranasal sinuses obtained by endoscopic operation were cultivated for the fungi. One sample of invasive mycosis was observed under electron-microscope. RESULTS: Fourteen cases were found to have following underlying conditions, including diabetes (n = 4), malignant tumor (n = 5). The infected sites were as follows: 7 cases presenting in unilateral maxillary sinus, 6 cases involving over two nasal sinuses, 8 cases invading the orbit. Of all 16 patients, 15 were positive (93.7%) for the culture. The positive rate of aspergillus was 62.5% and mucoraceae was 25.0%. The overall mortality rate was 50.0% after investigation from 6 months to 5 years. From 16 surgical specimens, hypha were proved in all cases for histopathologic methods. All of the 16 granulomatous and crumbley materials from the paranasal sinuses were found that inflammatory responses were predominantly neutrophilic leucocytes invasion (100%), suppurative granuloma formed in 15 cases (93.7%). Invasive diseases were characterized by prominent infarcts (27.8%), angio-invasion (100%), and surprisingly, prominent optic nervous invasion (16.7%) in biopsies. CONCLUSIONS: The incidence of invasive mycosis is correlated with patients who suffered from diabetes, malignant tumor and other basic diseases causing depression of immunological function. The pathologic study shows that the fungi which invade the tissue are mostly aspergillus or mucoraceae, and the fungal vasculitis is the direct reason for tissue damage.

Adult↗

[Study of the genetic stability of expression plasmid vector pMG36e in host bacteria].

OBJECTIVE: To study the genetic stability of expression plasmid vector pMG36e in Escherichia coli JM109 and Lactococcus lactis MG1363/36e and observe the effect of erythomycin for its stability. METHODS: We used classical method to determine the genetic stable rates of pMG36e in E. coli JM109 and Lactococcus lactis MG1363/36e with or without erythomycin selective pressure. RESULTS: When E. coli JM109 were continuously incubated to 120 generations, its pMG36e genetic stable rates were 100% and 96% respectively with or without erythomycin selective pressure. When Lactococcus lactis MG1363/36e were continuously incubated to 100 generations, its pMG36e genetic stable rates were the same 98%, with or without erythomycin selective pressure. CONCLUSION: pMG36e had good genetic stability in this two hosts. Erythromycin selective pressure had no significant effect for the genetic stability of pMG36e.

Culture Media↗

Noise reduction in MR angiography with nonlinear anisotropic filtering.

PURPOSE: To evaluate three-dimensional nonlinear anisotropic filtering in suppressing image noise in high spatial resolution magnetic resonance angiograms (MRA) acquired with hybrid undersampled projection reconstruction and phase contrast vastly undersampled isotropic projection reconstruction (PC-VIPR). MATERIALS AND METHODS: Three-dimensional nonlinear anisotropic filtering was quantitatively analyzed and evaluated through the measurement of contrast to noise ratio (CNR) in PC-VIPR images and contrast enhanced peripheral MRA images. To filter MRA images with ultra-high spatial resolution and poor CNR, a spatial frequency dependent nonlinear anisotropic filtering algorithm was proposed that uses two-step processing to filter the whole spatial frequency data. RESULTS: Three-dimensional nonlinear anisotropic filtering was shown to be effective in suppressing noise and improving CNR in MRA with isotropic spatial resolution. Higher CNR was achieved using spatial frequency dependent nonlinear anisotropic filtering. A typical CNR gain of between 50-100% was shown in our studies. CONCLUSION: Three-dimensional nonlinear anisotropic filtering significantly improved CNR in MRA images with isotropic spatial resolution. Spatial frequency dependent nonlinear anisotropic filtering further improved CNR for MRA images with ultra-high spatial resolution and low CNR.

Anisotropy↗

Contrast-enhanced peripheral magnetic resonance angiography using time-resolved vastly undersampled isotropic projection reconstruction.

PURPOSE: To investigate the application of time-resolved vastly undersampled isotropic projection reconstruction (VIPR) in contrast-enhanced magnetic resonance angiography of the distal extremity (single station), and peripheral run-off vasculature in the abdomen, thigh, and calf (three stations). MATERIALS AND METHODS: Time-resolved distal extremity imaging was performed using VIPR sequence through the comparison of two acquisition matrix sizes: 256 with TR/TE=3.7/1.4 msec and 320 with TR/TE=4.5/1.8 msec under the same scan time of two minutes. VIPR acquisition was combined with a bolus-chase technique to image the peripheral run-off vasculature. The time-resolved images were reconstructed using a revised sliding window reconstruction filter whose temporal aperture remained narrow for low spatial frequencies and increased quadratically to include all the projection data for high spatial frequencies. RESULTS: The new temporal filter significantly suppressed the undersampling streak artifacts and venous contamination, while maintaining a high temporal resolution. Both high spatial resolution (ranging from 1.56 x 1.56 x 1.56 mm to 1.25 x 1.25 x 1.25 mm) and high temporal resolution (three seconds per frame) distal extremity images and peripheral run-off images were generated using time-resolved VIPR acquisition, which provides isotropic spatial resolution and isotropic coverage. CONCLUSION: Time-resolved VIPR acquisition was demonstrated to be well suited for distal extremity imaging by providing isotropic spatial resolution, isotropic coverage, and high temporal resolution. The combination of time-resolved VIPR and bolus chase technique provided a novel approach for peripheral run-off examinations.

Abdomen↗

Floating table isotropic projection (FLIPR) acquisition: a time-resolved 3D method for extended field-of-view MRI during continuous table motion.

In this work, 3D vastly undersampled isotropic projection (VIPR) acquisition is used simultaneously with continuous table motion to extend the superior/inferior (S/I) FOV for MR angiograms. The new technique is termed floating table isotropic PR (FLIPR). The use of 3D PR in conjunction with table motion obviates the need to locate and prescribe imaging volumes containing the major blood vessels over the large superior-inferior (S/I) ranges encountered in whole-body imaging. In addition, the FLIPR technique provides extended anterior-posterior (A/P) abdominal coverage, isotropic spatial resolution, and temporal resolution. In volunteer studies, FLIPR MR angiograms with 1.6-mm isotropic spatial resolution that approached whole body in extent were acquired in less than 2 min.

Contrast Media↗

[Expression of telomerase reverse transcriptase and its significance in human fetal lung development].

OBJECTIVE: To investigate the expression and distribution of telomerase reverse transcriptase (hTERT) and its significance during the development of epithelial stem cells in human fatal lungs. METHODS: Human lung tissues were obtained at abortion from 37 fetuses 10-34 weeks of gestational age with parental consent, and the expression of hTERT in these tissues was examined by immunohistochemistry. RESULTS: In fetuses of 10 weeks old, hTERT was detected mainly in the epithelial cells of the proximal bronchi in the fetal lung, and migrated gradually to the distal bronchi as the lung developed. The hTERT expression level peaked at 17-20 weeks of gestation and then decreased over the period of alveolarization that occurred at about 25-26 weeks. In the later gestation period, strongly positive epithelial cells became concentrated in discrete patches near the basal membrane of the airway and scattered in only a few of the pulmonary alveoli. Morphologically, these cells resembled the basal cells and type II alveolar epithelial cells (AEC) or their progenitor cells. CONCLUSIONS: Telomerase expression and activity are hallmarks of the pulmonary stem or progenitor cells that maintain undifferentiated state and self-renewal capacity, and it plays a crucial role in the normal differentiation and regeneration of the bronchial and alveolar epithelial cells to maintain the epithelial integrity.

DNA-Binding Proteins↗

[Repair of the rabbit ear cartilage defects with transforming growth factor-beta1 and allogenic chondrocyte/poly-DL-lactide higher porosity polymer].

OBJECTIVE: To study the repair of the rabbit ear cartilage defects with transforming growth factor-beta1 (TGF-beta1) and allogenic chondrocyte/poly-DL-lactide (PDLLA) higher porosity polymer. METHODS: A total of 18 rabbits were divided into the TGF-beta1 and chondrocytes/PDLLA graft group, the chondrocytes/PDLLA graft group, and the blank control group. Samples were taken out at 4, 12 and 18 weeks after implantation. The histological characteristics were investigated. RESULTS: After 18 weeks of the transplantation, the repaired effects of TGF-beta1 and allogenic chondrocytes/PDLLA graft group was better than the allogenic chondrocytes/PDLLA graft group not only on general sample but also histology, and the blank control group were repaired with fibrous tissue. CONCLUSIONS: The allogenic chondrocytes/PDLLA graft could repair the rabbit ear cartilage defects while TGF-beta1 could improve the quality of the rabbit ear cartilage defects.

Animals↗