Biomedical subjects

Jean-Louis Heully

Publications and source records attributed to Jean-Louis Heully.

6 recordsLinked to original sources

PubMed2007

Description of carbo-oxocarbons and assessment of exchange-correlation functionals for the DFT description of carbo-mers.

Mono- and polycyclic valence isomers of carbo-[3]oxocarbon C(9)O(3) and carbo-[5]oxocarbon C(15)O(5) have been characterized on the singlet spin state potential energy surface. By contrast to their geometry, their relative stability is highly sensitive to the calculation level. The performance of LDA, GGA, meta-GGA, and hybrid functionals is compared to that of HF, post-HF, and multiconfigurational calculations. The results obtained for C(9)O(3) are compared to those obtained for hydrocarbon analogues such as &[3]pericyclyne C9(H2)3 and carbo-[3]radialene C9(CH2)3 and are analyzed on the basis of an energy decomposition scheme. The respective role of the exchange and correlation counterparts of the functional in the discrepancy of the results is discussed.

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PubMed2005

Towards accurate all-electron quantum Monte Carlo calculations of transition-metal systems: spectroscopy of the copper atom.

In this work we present all-electron fixed-node diffusion Monte Carlo (FN-DMC) calculations of the low-lying electronic states of the copper atom and its cation. The states considered are those which are the most relevant for the organometallic chemistry of copper-containing systems, namely, the (2)S, (2)D, and (2)P electronic states of Cu and the (1)S ground state of Cu(+). We systematically compare our FN-DMC results to CCSD(T) calculations using very large atomic-natural-orbital-type all-electron basis sets. The FN-DMC results presented in this work provide, to the best of our knowledge, the most accurate nonrelativistic all-electron correlation energies for the lowest-lying states of copper and its cation. To compare our results to experimental data we include the relativistic contributions for all states through numerical Dirac-Fock calculations, which for copper (Z=29) provide almost the entire relativistic effects. It is found that the fixed-node errors using Hartree-Fock nodes for the lowest transition energies of copper and the first ionization potential of the atom cancel out within statistical fluctuations. The overall accuracy achieved with quantum Monte Carlo for the nonrelativistic correlation energy (statistical fluctuations of about 1600 cm(-1) and near cancelation of fixed-node errors) is good enough to reproduce the experimental spectrum when relativistic effects are included. These results illustrate that, despite the presence of the large statistical fluctuations associated with core electrons, accurate all-electron FN-DMC calculations for transition metals are nowadays feasible using extensive but accessible computer resources.

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PubMed2004

A study of the correlation effects upon the modelization of the double exchange phenomenon.

A previous work by the authors has shown that the usual spin Hamiltonian used to model the magnetic spectra of mixed valence compounds was not sufficient to reproduce the magnetic spectrum of the molecule [Fe(2)(OH)(3)(NH(3))(6)](2+). In the present paper, the spin Hamiltonian is confronted to correlated ab initio calculations. The discrepancy between this Hamiltonian and the calculations is investigated and explained. It is pointed out that the multiconfigurational nature of the transition metal is responsible for this discrepancy. However, we show that this effect can easily be treated at the complete active space self-consistent field (CASSCF) level and that no further correlation treatment is needed. The spin Hamiltonian, which reproduces very well the minimal CASSCF results, could not be improved to recover the multireference effects.

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PubMed2004

An analysis of core effects on shape-consistent pseudopotentials.

Large core (seven-valence electrons) shape-consistent averaged relativistic pseudopotentials (AREP) including core effects have been derived for the halogen series (Cl,Br,I,At). The influence of core effects on the spin-orbit splitting of the halogen and alkali atoms is clearly demonstrated within an all-electron four-component atomic reference calculation by means of a perturbation analysis. In particular, it is shown that AREPs extracted at the Dirac-Coulomb-Fock level, which already include spin-orbit polarization effects, give excellent results for atomic spectroscopy and equilibrium distances of halogen dimers. We also show that in our approach the core effects, included by configuration interaction using the numerical GRASP code, are transferred to the averaged orbital one-electron energy, defined in a perturbational way. This leads to a modification of the extracted AREPs by core effects, which is illustrated by calculations of the first atomic excited states using these AREPs. These results support the validity of including core effects directly in the AREPs extracted in a shape-consistent scheme. The transferability to the atomic excited states as well as to the molecular case is also verified.

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PubMed2004

Calculation of the ground and excited states of a mixed valence compound [Fe2(OH)3(NH3)6]2+: a class II or class III compound?

The effective group potentials (EGP) approach has been successfully used for the computation of the ground and excited states energies of the mixed valence compound [Fe2(OH)3(NH3)6]2+. It is the first time that for a system as big as the complex presented above the ground and excited states are computed with their own orbitals and studied in such a detailed way. First of all, the NH3 EGP was validated by comparing calculations where NH3 was treated explicitly at different levels of calculations. Once the validation was obtained, the complete spectrum of the compound under interest was calculated and compared with results obtained in a previous work by Barone et al. and the spin Hamiltonian of widespread use. Some deviations from these predictive approaches were observed. This allowed us to emphasize the importance of the dynamic correlation which is not included explicitly in the spin Hamiltonian. Then, the influence of vibration has been studied by computing the potential energy curves obtained when moving the (OH)3 plane. This study shows that our calculations lead to a delocalized compound (class III) as expected according to former experimental data.

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PubMed2003

Using effective group potential methodology for predicting organometallic complex properties.

Using the Effective Group Potentials (EGP) method, optimal geometries, harmonic vibrational frequencies, and relative energies of different sets of metal complexes are calculated. All of the systems under consideration contain the cyclopentadienyl (Cp) ligand. They are as follows: (i). Group V metal Atom complexes showing one Cp ligand, (ii). a tetrameric Al-Cp compound with four Cp ligands, (iii). homometallic lutetium hydrides containing six cyclopentadienyl rings. Various electron correlation treatments have been carried out. All of the results compare very satisfactorily with available experimental data and with all-electron ab initio calculations performed for this work or published in the literature. Furthermore, the performance of the EGP method was tested on a rather large complex for which experimental evidence exists, but no all-electron calculation has been reported so far.

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