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Biomedical subjects

J S Singh

Publications and source records attributed to J S Singh.

14 recordsLinked to original sources
PubMed2006

Contrasting pattern of methanotrophs in dry tropical forest soils: effect of soil nitrogen, carbon and moisture.

Population dynamics of methane-oxidizing bacteria (MOB) was measured for 2 consecutive years for four forest and one savanna sites in seasonally dry tropical regions of India. The soils were nutrient-poor and well drained. These sites differed in vegetational cover and physico-chemical features of soils. There were significant differences in MOB population size during the 2 years (mean 0.40 and 0.48 x 10(5) cells g(-1) dry soil), and at different sites (mean 0.38-0.59 x 10(5) cells g(-1) dry soil). The mean population size of MOB was higher (P<0.05) in dry seasons than in the rainy season at all the sites. There was a significant season and site interaction, indicating that the effect of different seasons differed across the sites. There was a positive relation between soil moisture and MOB population size during summer (the driest period) and a negative relation during the rest of the year. The number of MOB was consistently higher for the Kotwa hill base site than rest of the sites having higher soil organic C and total N. The results suggested that in seasonally dry tropical forests the moisture, C and N status of the soil regulates the population size of MOB (methanotrophs) in the long term.

Carbon↗
PubMed2005

Dynamics of viable nitrifier community, N-mineralization and nitrification in seasonally dry tropical forests and savanna.

The study was conducted in Vindhyan region, to assess the N-mineralization, nitrification and size of viable community of ammonium- and nitrite-oxidizing bacteria as affected by different sites and seasons. Six different ecosystems (four forests and two savannas), which differ in terms of topography, vegetation and moisture status, were selected for the present study. The soils of the study sites differ significantly in its physico-chemical properties. The savanna site had significantly higher pH (7.2), bulk density (1.37 g cm(-3)) and silt content (67.80%) but lower water holding capacity (1.37%), total-C (16,356 microg g(-1) dry soil), N (1090 microg g(-1) dry soil) and P (213 microg g(-1) dry soil) than forest sites. The soil moisture content, N-mineralization, nitrification rates and numbers of ammonium- and nitrite-oxidizing bacteria were highest in the wet season and lowest in dry season, while the size of mineral-N (NH4(+)-N and NO3(-)-N) showed a reverse trend at the sites. The N-mineralization, nitrification and nitrifier population size differ significantly across the site and season. The numbers of free-living cells of ammonium- and nitrite-oxidizing bacteria were significantly related to each other and to N-mineralization, nitrification, soil moisture and mineral-N components. The N-mineralization, nitrification and the viable number of nitrifying cells were consistently higher for forest soils compared to savanna sites. It was concluded that soil microbial process (N-mineralization and nitrification) and nitrifier population size were dependent on site topography, vegetation cover and soil moisture status.

Bradyrhizobiaceae↗
PubMed2004

Cyanobacteria in Antarctica: ecology, physiology and cold adaptation.

Cyanobacterial species composition of fresh water and terrestrial ecosystems and chemical environment of water in Schirmacher Oasis in Continental Antarctica was investigated. Over 35 species of cyanobacteria were recorded. Diazotrophic species both heterocystous and unicellular contributed more than half to the count except in lake ecosystem. The species composition varied among the fresh water as well as terrestrial ecosystems. The physico-chemical analyses of water revealed its poor nurient content which might have supported the growth of diazotrophic cyanobacteria in an Antarctic environment. Among the cyanobacteria Oscillatoria, Phormidium and Nostoc commune were the dominant flora in most of the habitats. The physiological characteristics of isolated cyanobacteria strains indicated that N2-fixation, nitrate uptake, nitrate-reduction, ammonium-uptake, GS-transferase activity and photosynthesis was unaffected at low temperature (5 degrees C) which indicated low temperature adaptation for Antarctic cyanobacteria. This phenomenon was not evident in different strains of tropical origin. The temperature optima for N2-fixation for the different Antarctic cyanobacterial strains was in the range of 15-25 degrees C, nearly 10 degrees C lower than their respective reference strains of tropical origin. Similar results were obtained for cyanobacteria-moss association. The low endergonic activation energy exhibited by the above metabolic activities supported the view that cyanobacteria were adapted to Antarctic ecosystem.

Antarctic Regions↗
PubMed2002

Medical ethnobotany of the tribals of Sonaghati of Sonbhadra district, Uttar Pradesh, India.

The present ethnobotanical exploration study presents the folk medicinal uses of certain plants by tribes of the Sonbhadra district in the Uttar Pradesh state of India. One hundred and twenty five plants from 57 families, which are therapeutically used against different diseases, such as cough, cold, dysentery, diarrhoea, ulcers, diabetes, male and female weakness, snake-bite and skin disorders are covered in this report. Part of the plant used, dosage and the mode of drug administration in different ailments are described.

Drug Administration Routes↗
PubMed2001

Overexpression of the retinoic acid-responsive gene Stra6 in human cancers and its synergistic induction by Wnt-1 and retinoic acid.

Genetic defects in the Wnt-1 signaling pathway contribute to human tumor progression and are especially prevalent in colorectal cancer. We screened mouse C57MG cells to isolate mRNAs induced by Wnt-1 and identified Stra6, an mRNA known to be up-regulated by retinoic acid. Up-regulation of Stra6 mRNA was also observed in hyperplastic mammary tissue and mammary gland tumors from transgenic mice expressing Wnt-1 and in human tumors that frequently harbor defects in Wnt-1 signaling. Stimulation of C57MG cells with retinoic acid plus Wnt-1 resulted in expression of Stra6 transcript to levels greatly exceeding that observed with either stimulus alone. This synergy could be explained in part by the up-regulation of retinoic acid receptor-gamma that was observed in response to Wnt-1 signaling. Accordingly, treatment of human colorectal cancer cell lines with retinoic acid resulted in the up-regulation of Stra6 mRNA and accumulation of Stra6 protein at the cell membrane. The data support a model in which Wnt-1 signaling synergizes with retinoids to activate retinoic acid receptor-gamma-responsive genes in human cancers.

Adenocarcinoma↗
PubMed1994

Tetranitromethane as a surface antiviral disinfectant.

Tetranitromethane, a protein nitrating agent, was tested for its ability to disinfect surfaces from viruses. Different surfaces on commercially available pocket calculators were pretreated with either the Indiana strain of vesicular stomatitis virus or the Herts' strain of Newcastle disease virus. The calculators surfaces were then sprayed with either tetranitromethane or control solutions. The calculators were incubated for 30 min at ambient temperature, and then the surfaces were wiped with sterile swabs. The swabs were placed into test tubes containing phosphate-buffered saline. Samples of the phosphate-buffered saline were then titered on appropriate cell lines by plaque assay. The results indicated that the amount of vesicular stomatitis virus and Newcastle disease virus recovered from the tetranitromethane-treated surfaces was dramatically decreased compared to the amount of virus recovered from control-treated surfaces. These data suggest that tetranitromethane may be useful to disinfect surfaces from both enveloped and non-enveloped RNA viruses.

Antiviral Agents↗
PubMed1993

Essential amino acids involved in glucan-dependent aggregation of Streptococcus sobrinus.

The active site of the glucan-binding lectin (or agglutinin) (GBL) of Streptococcus sobrinus was probed by specific amino acid modifying reagents. Reagents specific for carboxylates, imidazolium, phenolic, and lysyl residues inactivated the cell bound GBL, whereas agents specific for sulfhydryl, disulfide, and guanidinium groups had no effect on the lectin. A low molecular weight alpha-(1-->6)-glucan provided partial protection against the reagents which inactivated the protein, whereas an alpha-(1-->4)-glucan, incapable of complexing with the lectin, afforded no protection. A reagent specific for tryptophan, 2-hydroxy-5-nitrobenzyl bromide (HNB) did not cause a loss of GBL activity, although N-bromosuccinimide, a reagent capable of oxidizing tryptophan and less selective than HNB, was a very effective inhibitor of the glucan-dependent cellular aggregation. In the latter case, alpha-(1-->6)-glucan did not protect. Hydroxylamine partially restored the loss of lectin activity due to treatment of the cells with N-acetylimidazole (highly specific for tyrosine), glycine methyl ester plus water-soluble carbodiimide (specific for carboxylates), and diethylpyrocarbonate (specific for histidine). Because the soluble form of GBL rapidly loses activity when purified, it was necessary to perform the chemical modification of the amino acid side chains employing the cell-bound form of the lectin. Because specific ligand [alpha-(1-->6)-glucan] protected against the inactivation of the agglutinin by selected reagents and because lectin activity could be restored in some cases, it was possible to identify likely essential amino acid residues needed for glucan binding. The results, taken together, suggest that aspartic (and/or glutamic) acid, histidine, lysine, and tyrosine are critical amino acids responsible for agglutinin activity. Present efforts are directed to the design and synthesis of glucan analogues which may serve as affinity inactivating agents of the lectin. Such glucan derivatives may be of value in studies on the role of the lectin in cariogenesis.

Amino Acids↗
PubMed1992

Chelating agents inhibit activity and prevent expression of streptococcal glucan-binding lectins.

Several of the cariogenic mutans streptococci produce cell wall-associated glucan-binding lectins (GBLs). The lectins bind alpha-1,6-linked glucans and have no affinity for other polysaccharides or anomeric linkages. When citrate or lactate was included in the growth medium, expression of the activities of the GBLs of Streptococcus cricetus and S. sobrinus was prevented. Furthermore, chelating agents, including citrate, lactate, EDTA, and acetylacetone, were able to reversibly inhibit glucan-induced aggregation of GBL+ streptococci. In addition, the chelating agents prevented sucrose-dependent streptococcal adhesion to glass surfaces and dispersed preformed adherent masses of the streptococci. Neither citrate nor other chelating agents modified the activities of glucosyltransferases. Expression of the lectin could only be achieved by the addition of manganous ion to the growth medium. Chloramphenicol and other metabolic inhibitors prevented synthesis of GBL in cells obtained from manganese-deficient medium and shifted to manganous ion-sufficient medium. The GBL may be a manganoprotein, the manganese of which may be perturbed, but not removed, by chelating agents. During synthesis of the GBL, manganous ion may be required in order for the protein to achieve an active conformation. Citrate or other chelating agents may have promise as anticaries agents.

Bacterial Adhesion↗
PubMed1991

Insulin-like growth factor I and II gene expression in Balb/C mouse liver during postnatal development.

We studied the developmental shift from IGF-II to IGF-I mRNA synthesis in Balb/C mouse liver. IGF-I mRNA levels were low at birth, increased with age to peak at weaning, and IGF-I gene expression again increased during puberty. IGF-II expression was high during early postnatal development, but became nondetectable at weaning. Thus in early life there is a reciprocal relationship of rising IGF-I and falling IGF-II mRNA. Northern analysis revealed four IGF-I mRNA transcripts ranging from 1.1-7.0 kb, with the 1.1 kb being the most prominent. Five IGF-II transcripts ranging from 1.7-4.0 kb were found, with the 4.0 kb being the most prominent. The pattern of Serum IGF-I and IGF-II values paralleled liver IGF-I and IGF-II mRNA levels.

Aging↗