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J P Marques

Publications and source records attributed to J P Marques.

6 recordsLinked to original sources
PubMed2005

Intermolecular multiple quantum coherences at high magnetic field: the nonlinear regime.

Experiments have been carried at magnetic-field strengths of 9.4, 14.1, and 17.6 T to explore the evolution of intermolecular multiple quantum coherences in the nonlinear regime where the system evolves for times that are much greater than the characteristic time of action of the long-range dipolar field, tau(d). The results show the expected Bessel function form of the recorded signal as a function of time of evolution, with evident zeros and sign changes. As expected, the rate of signal evolution increases at higher-field strengths as a result of the increased equilibrium magnetization. A numerical method for calculating the evolution of magnetization under the action of the distant dipolar field, relaxation, and diffusion that is based on Fourier analysis of the magnetization distribution has been applied to the correlated two-dimensional spectroscopy revamped by asymmetric z-gradient echo detection sequence in the nonlinear regime and shown to produce results that are in good agreement with experimental data acquired at different magnetic fields and rates of spatial modulation. Experiments and simulations have also been used to explore the evolution of magnetization in a mixture of two interacting spin species in the nonlinear regime.

Algorithms↗
PubMed2004

Optimizing the sequence parameters for double-quantum CRAZED imaging.

The evolution of magnetization during repeated application of the double-quantum-(DQ)-CRAZED sequence is analyzed, with the aim of identifying sequence parameters that maximize sensitivity to signal produced by the distant dipole field (DDF). Phase cycling schemes that allow cancellation of signals following undesired coherence pathways are also described. Simulations and imaging experiments carried out at 3 T on phantoms and the human head were used to verify the analysis. The results indicate that in the absence of phase cycling, the DDF-related signal-to-noise ratio (SNR) per unit time is maximized using TR=2.05 T1, along with values of the RF flip angles (alpha approximately 90 degrees and beta approximately 60 degrees ), and echo time (TE=T2) that have previously been shown to maximize the DDF-related signal at long TR. However, with TR=2.05 T1 there can also be a significant signal contribution due to stimulated echo effects (up to 40% of the signal for water at 3 T and TE=70 ms). Using a two-step phase cycle, the stimulated echo signal is eliminated and the maximum SNR per unit time occurs for TR=2.76 T1. It is also demonstrated that sensitivity to signal changes caused by small variations in T2 is maximized by setting TE=2T2.

Brain↗
PubMed2003

Targeting of EGFP chimeras within chloroplasts.

We have tested the potential of EGFP, a derivative of the green fluorescent protein (GFP), as a passenger protein for the analysis of protein transport processes across the thylakoid membranes in chloroplasts. In contrast to the majority of fusion proteins commonly used in such studies, EGFP is not of plant origin and can therefore be assumed to behave like a "neutral" passenger protein that is unaffected by any internal plant regulatory circuits. Our in vitro transport experiments clearly demonstrate that EGFP is a suitable passenger protein that can be correctly targeted either to the stroma or to the thylakoid lumen if fused to the appropriate transit peptide. The transport of EGFP across the thylakoid membrane shows, however, a clear pathway preference. While the protein is efficiently targeted by the deltapH/TAT pathway, transport by the Sec pathway is barely detectable, either with isolated thylakoids or with intact chloroplasts. This pathway specificity suggests that EGFP is folded immediately after import into the chloroplast stroma, thus preventing further translocation across the thylakoid membrane by the Sec translocase. The data obtained provide a good basis for the development of molecular tools for transport studies using EGFP as a passenger protein. Furthermore, plant lines expressing corresponding EGFP chimeras are expected to allow in vivo studies on the transport and sorting mechanisms involved in the biogenesis of the chloroplast.

Chloroplasts↗
PubMed1995

An upstream U-snRNA gene-like promoter is required for transcription of the Arabidopsis thaliana 7SL RNA gene.

The genes transcribed by RNA polymerase (pol) III can be placed into four distinct groups based on the nature and position of their promoter elements. In the higher eukaryotes equivalent genes usually belong to the same sub-type of pol III promoters and there are few examples of genes which have changed promoter type during evolution. In this work we demonstrate that the promoter of the Arabidopsis thaliana 7SL RNA gene is located upstream of the coding region and is identical to the promoters of pol III-specific plant U-small nuclear RNA (U-snRNA) genes. Sequence analysis of two different 7SL genes from A. thaliana revealed that both genes contain two sequence elements in their 5' flanking regions identical in sequence and position to the highly conserved USE and TATA elements of the pol III-transcribed plant U-snRNA genes. Mutational analysis of these elements in the At7SL-2 gene indicates that the USE and TATA elements are both necessary and account for > or = 90% of the transcriptional activity of this gene in transfected plant protoplasts. Within the coding region of both genes there is a sequence element which is a 10/11 nt match to the consensus B-box element of tRNA genes, however, this element is not important for gene activity. These findings distinguish the plant genes from the human 7SL gene, which has both internal and upstream promoter elements and its upstream elements are different from those found in the human U-snRNA genes.

Arabidopsis↗
PubMed1992

[Relationship between the Steuart resistance index of the umbilical artery in non-pathologic pregnancy and the weight and ponderal index of the newborn].

Umbilical artery Doppler velocimetry was performed at 28-32 and 36-38 weeks of gestation in a low risk population to correlate the Stuart's resistance index (Sistole/Diastole--S/D) to the weight and ponderal index of the newborn, and to determine the preditive value of S/D ratio greater than the 95 centil in the screening of newborns of weight or ponderal index lower than the 10 centil. Two hundred and eight two pregnant women were studied (146 at 28-32 weeks; 221 at 36-38 weeks) and Stuart Resistance Index was obtained by a continuous wave Doppler System. In both periods we had an inversely proportional correlation between the resistance index and the weight and ponderal index of the newborn; nevertheless the low sensibility and preditive value of the test shows that it should not be used as an isolated diagnostic tool to screen a low risk population for newborns with a low weight or low ponderal index.

Birth Weight↗