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Biomedical subjects

J M Squire

Publications and source records attributed to J M Squire.

At least 19 recordsLinked to original sources
PubMed2003

Modelling muscle motor conformations using low-angle X-ray diffraction.

New results on myosin head organization using analysis of low-angle X-ray diffraction patterns from relaxed insect flight muscle (IFM) from a giant waterbug, building on previous studies of myosin filaments in bony fish skeletal muscle (BFM), show that the information content of such low-angle diffraction patterns is very high despite the 'crystallographically low' resolution limit (65 A) of the spacings of the Bragg diffraction peaks being used. This high information content and high structural sensitivity arises because: (i) the atomic structures of the domains of the myosin head are known from protein crystallography; and (ii) myosin head action appears to consist mainly of pivoting between domains which themselves stay rather constant in structure, thus (iii) the intensity distribution among diffraction peaks in even the low resolution diffraction pattern is highly determined by the high-resolution distribution of atomically modelled domain mass. A single model was selected among 5000+ computer-generated variations as giving the best fit for the 65 reflections recorded within the selected resolution limit of 65 A. Clear evidence for a change in shape of the insect flight muscle myosin motor between the resting (probably like the pre-powerstroke) state and the rigor state (considered to mimic the end-of-powerstroke conformation) has been obtained. This illustrates the power of the low-angle X-ray diffraction method. The implications of these new results about myosin motor action during muscle contraction are discussed.

Journal Article↗
PubMed2001

A new twist in the collagen story--the type VI segmented supercoil.

Collagen occurs in two major forms: fibrillar and non-fibrillar. Non-fibrillar collagens are structurally more variable and relatively ill-understood. In this work we analysed the amino acid sequence of type VI collagen, a non-fibrillar collagen that forms antiparallel dimers. A sequence motif was discovered that gives rise to systematic molecular coiling. There is a common periodicity ( approximately 23 or 2 x 23 residues) in the charged amino acids, in the prolines and in the discontinuities in the Gly-X-Y triplets. In addition, there is a different periodicity ( approximately 21 amino acids) in the apolar groups. The two repeats mean that the only way to simultaneously maximize both the hydrophobic and polar interactions during dimer formation is with the molecules antiparallel, overlapped by 75 nm as observed, and supercoiled. The alternating proline-rich and charge-rich patches, often together with discontinuities in the Gly-X-Y sequences, coincide with each half-turn of the supercoil, thus breaking it into segments. We have termed this structure the collagen segmented supercoil. The segmented supercoil and variants may be common aggregation motifs for the non-fibrillar collagens.

Amino Acid Motifs↗
PubMed2001

Quasi-periodic substructure in the microvessel endothelial glycocalyx: a possible explanation for molecular filtering?

The luminal surface of endothelial cells is lined with the glycocalyx, a network structure of glycoproteins probably 50 to 100 nm thick. It has been suggested that a relatively regular fibre-matrix structure may be responsible for the ultrafiltration properties of microvascular walls, both when the endothelium is continuous and when it is fenestrated. Positive structural evidence demonstrating an underlying periodicity in the glycocalyx has been hard to obtain. Here we present structural analysis of glycocalyx samples prepared in a variety of ways for electron microscopy. Using computed autocorrelation functions and Fourier transforms of representative areas of the electron micrograph images, we show that there is an underlying three-dimensional fibrous meshwork within the glycocalyx with characteristic spacings of about 20 nm. Together with a fibre diameter consistent with our observations of about 10-12 nm, the 20-nm spacing provides just the size regime to account satisfactorily for the observed molecular filtering; the observations are consistent with the fibre matrix model. We also show that the fibrous elements may occur in clusters with a common intercluster spacing of about 100 nm and speculate that this may reveal organisation of the glycocalyx by a quasi-regular submembranous cytoskeletal scaffold.

Animals↗
PubMed2000

Structure of abnormal molecular assemblies (collagen VI) associated with human full thickness macular holes.

Transversely banded deposits with an approximately 100-nm periodicity have been seen in association with a number of eye pathologies (e.g., age-related macular degeneration). Recently such aggregates have also been discovered in the cortical vitreous of a patient suffering from full thickness macular holes. The aggregates in the vitreous were of sufficient size and regularity for us to attempt 3D ultrastructural studies in the electron microscope. The molecules forming this aggregate pack in a centered tetragonal unit cell of dimensions approximately 26 x 26 x 180 nm. A real-space (r-weighted back projection) 3D reconstruction was computed. The aggregate is discussed in terms of its possible protein constituents. Collagen VI has been singled out as the most likely protein to form the aggregate. Two alternative models for the molecular packing are proposed, comprising aggregates of molecular tetramers or octamers. Understanding the structure of these abnormal banded deposits in the eye should help to throw light on the pathophysiological mechanisms of the diseases, including age-related macular degeneration, in which they occur.

Bruch Membrane↗
PubMed2000

A-band architecture in vertebrate skeletal muscle: polarity of the myosin head array.

Despite extensive knowledge of many muscle A-band proteins (myosin molecules, titin, C-protein (MyBP-C)), details of the organization of these molecules to form myosin filaments remain unclear. Recently the myosin head (crossbridge) configuration in a relaxed vertebrate muscle was determined from low-angle X-ray diffraction (Hudson et al. (1997), J Mol Biol 273: 440-455). This showed that, even without C-protein, the myosin head array displays a characteristic polar pattern with every third 143 A-spaced crossbridge level particularly prominent. However, X-ray diffraction cannot determine the polarity of the crossbridge array relative to the neighbouring actin filaments; information crucial to a proper understanding of the contractile event. Here, electron micrographs of negatively-stained goldfish A-segments and of fast-frozen, freeze-fractured plaice A-bands have been used to determine the resting myosin head polarity relative to the M-band. In agreement with the X-ray data, the prominent 429 A-spaced striations are seen outside the C-zone, where no non-myosin proteins apart from titin are thought to be located. The head orientation is with the concave side of the curved myosin heads (containing the entrance to the ATP-binding site) facing towards the M-band and the convex surface (containing the actin-binding region at one end) facing away from the M-band.

Animals↗
PubMed1999

Partially systematic molecular packing in the hexagonal columnar phase of dogfish egg case collagen.

The collagen that forms the egg case of the dogfish Scyliorhinus canicula is stored in bulk in the female nidamental glands. Here the collagen molecules are thought to undergo a series of distinct pH-dependent liquid crystalline aggregation phase changes before assembling into the final arrangement encountered in the mature egg case. One liquid crystalline phase is hexagonal with the centres of two adjacent hexagons about 36 nm apart. We have collected tilt series of the hexagonal phase from plastic sections of the nidamental gland and have produced a three-dimensional reconstruction of the collagen arrangement of this phase. The reconstruction features axial columns of protein density lying regularly on the vertices of hexagonal cells of edge length 21 nm. Each column is connected to three nearest neighbours by irregular sheets of protein, but there appear to be preferred molecular directions at about 40 degrees to 50 degrees to the columns. The reconstruction has been interpreted in terms of known interactions of this collagen in other assemblies.

Amino Acids↗
PubMed1998

A new look at thin filament regulation in vertebrate skeletal muscle.

It is 30 years since Ebashi and colleagues showed that Ca2+ ions directly affect regulation of the myosin-actin interaction in muscle through the action of tropomyosin and troponin on muscle thin filaments. It is more than 20 years since the idea was put forward that tropomyosin might act, at least in part, by changing its position on actin, thus uncovering or modifying the myosin binding site on actin when troponin molecules take up Ca2+. Since that time, a great deal of evidence for and against this steric blocking mechanism has been published: a structure for actin filaments at close to atomic resolution has been proposed, and the whole regulation story has become both more complicated and more subtle. Here we review structural and biochemical aspects of regulation in vertebrate skeletal muscle. We show that some basic ideas of the steric blocking mechanism remain valid. We also show that additional factors, such as troponin movements and structural changes within the actin monomers themselves, may be crucial. A number of the resulting regulation scenarios need to be distinguished.

Actins↗
PubMed1997

Myosin head configuration in relaxed fish muscle: resting state myosin heads must swing axially by up to 150 A or turn upside down to reach rigor.

The arrangement and shape of myosin heads in relaxed muscle have been determined by analysis of low-angle X-ray diffraction data from a very highly ordered vertebrate muscle in bony fish. This reveals the arrangement and interactions between the two heads of the same myosin molecule, the shape of the resting myosin head (M.ADP.Pi) assuming a putative hinge between the myosin catalytic domain and the light chain binding-domain, and the way that the actin-binding sites on myosin are arrayed around the actin filaments in the bony fish muscle A-band cell unit. The results are discussed in terms of possible force-generating mechanisms. Changes in myosin head shape or tilt have been implicated in the mechanism of force generation. The myosin head arrangement, including perturbations from perfect helical symmetry, has all heads oriented roughly the same way up (there is only a small range of rotations around the head long axis). X-ray data do not define the absolute polarity of the myosin head array. The resting head rotation is either similar to (65 degrees difference) or opposite to (115 degrees difference) the rotation in the rigor state. If the rotations are similar, probably the more likely possibility, then the average relative axial displacement of the inner and outer ends of the heads from the resting state to rigor is about 140 to 150 A. If (less likely) the resting head rotation is opposite to rigor, then the heads would need to turn over (i.e. rotate about 115 degrees around their own long axes) and the mean relative axial displacement from relaxed to rigor would only be 20 to 30 A.

Actins↗
PubMed1997

Architecture and function in the muscle sarcomere.

Striated muscle sarcomeres in vertebrates comprise ordered arrays of actin and myosin filaments, organized by an elaborate protein scaffold. Recent innovative work in a number of laboratories has greatly improved our knowledge of these structures, their organization and their interactions. Structural details have been reported on myosin filaments, actin filaments, Z-bands, M-bands, titin, and nebulin. Time-resolved X-ray diffraction and electron microscopy are revealing the molecular movements involved in force production and regulation.

Actins↗
PubMed1996

Evolution of myosin filament arrangements in vertebrate skeletal muscle.

A survey of skeletal muscles throughout craniates shows basic kinds of myosin filament arrangement, simple-lattice and superlattice, within the A-band of each sarcomere. Distribution of simple- and superlattice arrangements across a phylogeny of craniates suggests that the superlattice arrangement is primitive and that Amia and teleosts are derived in showing simple-lattice arrangements. Two taxa examined (Scyliorhinus and Acipenser) show both lattice types within the same organism implying that there is not a simple evolutionary transformation of one to the other fiber arrangement. We discuss the possible functional significance of the different lattice types. We believe that the crossbridges may have greater competition for actin binding sites in simple-lattice muscles compared to the superlattice types.

Animals↗
PubMed1995

Structural changes in actin-tropomyosin during muscle regulation: computer modelling of low-angle X-ray diffraction data.

The crystal structure of G-actin monomer has been used together with tropomyosin in a filament model to explain the low-angle X-ray diffraction data from relaxed and activated actin filaments. The four-subdomain actin monomer can be approximated quite well by a four-sphere unit. Orienting this unit and tropomyosin into a filament by searching for the best fit between the computed Fourier transform and the observed vertebrate skeletal muscle low-angle actin layer-lines from muscles at non-overlap sarcomere lengths produced models for the structural changes within the thin filaments (actin plus tropomyosin) between the resting state and the active states, which occur as a result of calcium-activation and independent of myosin interaction with actin. The models are very sensitive to changes in the positions of the centres of mass of the subdomains, but not to the exact shape of the objects used to represent them (e.g. spheres, ellipsoids etc.), as long as the volume is fixed, at the resolution here considered. It is concluded that, even with a four-subdomain structure for the actin molecules, the observed low-angle X-ray diffraction patterns cannot be explained without a substantial azimuthal swing of the tropomyosin strands when resting filaments are calcium-activated. The direction of this swing upon calcium-activation is away from a position close to the proposed major binding site of the myosin head on actin; a result consistent with the original "steric blocking model" of thin filament-based regulation in which the tropomyosin position on actin is crucial for regulation of the myosin crossbridge cycle on actin. Tropomyosin sterically hindering myosin attachment in the "off" state remains a possibility. However, even in the "on" state, the tropomyosin position is close enough to the myosin-binding site to have an effect, where it could regulate the transition of the head from a weak to a strong state. In addition to this tropomyosin movement there are small, but plausible, actin subdomain movements. A tropomyosin shift on its own will not explain the data. Allowance for possible movement of actin subdomain 2 along with the tropomyosin shift still does not explain the data. An additional small movement of subdomain 1; the main myosin-binding subdomain, is postulated.

Actin Cytoskeleton↗
PubMed1994

M-band structure, M-bridge interactions and contraction speed in vertebrate cardiac muscles.

Cardiac muscle M-band structures in several mammals (guinea pig, rabbit, rat and cow) and also from three teleosts (plaice, carp and roach), have been studied using electron microscopy and image processing. Axial structure seen in negatively stained isolated myofibrils or negatively stained cryo-sections shows the presence of five strong M-bridge lines (M6, M4, M1, M4' and M6') except in the case of the teleost M-bands in which the central M-line (M1) is absent, giving a four-line M-band. The M4 (M4') lines are consistently strong in all muscles, supporting the suggestion that bridges at this position are important for the structural integrity of the A-band myosin filament lattice. Across the vertebrate kingdom, cardiac M-band ultrastructure appears to correlate roughly with heartbeat frequency, just as in skeletal muscles it correlates with contraction speed, reinforcing the suggestion that some M-band components may have a significant physiological role. Apart from rat heart, which is relatively fast and has a conventional five-line M-band with M1 and M4 approximately equal, the rabbit, guinea pig and beef heart M-bands from a new 1 + 4 class; M1 is relatively very much stronger than M4. Transverse sections of the teleost (roach) cardiac A-band show a simple lattice arrangement of myosin filaments, just as teleost skeletal muscles. Almost all other vertebrate striated muscles, including mammalian heart muscles, have a statistical superlattice structure. The high degree of filament lattice order in teleost cardiac muscles indicates their potential usefulness for ultrastructural studies. It is shown that, in four-line M-bands in which the central (M1) M-bridges are missing, interactions at M4 (M4') are sufficient to define the different myosin filament orientations in simple lattice and superlattice A-bands. However the presence of M1 bridges may improve the axial order of the A-band.

Actin Cytoskeleton↗
PubMed1994

Molecular movements in contracting muscle: towards "muscle--the movie".

The recent publication of the crystal structures of G-actin and of myosin subfragment-1, together with analysis of a time-resolved series of well sampled low-angle 2D X-ray diffraction patterns from bony fish muscle permits the study of the molecular movements in muscle that are associated with generation and regulation of contractile force. Here it is shown that even though low-angle (i.e. low resolution) X-ray diffraction patterns are being used, these patterns are sensitive, for example, to sub-domain movements of as little as 3 A or 4 degrees within the actin monomers of actin filaments. Actin filament diffraction patterns from whole muscle are being used to define actin domain and tropomyosin movements involved in regulation. Myosin and actin filament diffraction patterns are being used together to start to show how the complete "quasi-crystalline" unit cell in the bony fish muscle A-band can be modelled as a series of time-slices through a typical tetanic contraction of the muscle. In this way, the time sequence of images can be used to create "muscle--the movie".

Actins↗
PubMed1993

Fish muscle structure: fibre types in flatfish and mullet fin muscles using histochemistry and antimyosin antibody labelling.

In studies of the myosin crossbridge interaction with actin in vertebrate muscles, the muscles of bony fish have the unique advantage for ultrastructural work that the A-band has a simple 'crystalline' lattice of myosin filaments. However, the anatomy and physiology of these fish muscles is relatively poorly understood compared with the rabbit, chicken or frog muscles conventionally used for crossbridge studies. Here the fibre types in fish fin muscles have been characterized to allow sensible selection of single fish fibres for ultrastructural studies. The fibre type compositions of the fin muscles of mullet, plaice, sole and turbot were examined by histochemistry and immunohistochemistry using polyclonal antibodies raised against various myosin isoforms: fish slow, fish fast, mammalian fast (type IIA) and chicken tonic myosins. In the mullet, fin muscles were composed of variable proportions of fast and slow fibres. In the three flatfish, the fin muscle showed a zonal arrangement with slow fibres, binding anti-slow myosin antibody, next to the skin (alpha region). The bulk of the muscle, distal to the skin, was a typical fast muscle both histochemically and in its reaction with antibodies (delta region). Between these two regions there may be one (sole) or two (turbot, plaice) intermediate zones (beta and gamma regions) comparable to the pink/intermediate layer of myotomal muscle. In the plaice fin muscle, two kinds of slow fibre could be distinguished immunohistochemically.

Animals↗
PubMed1993

How common is the atypical mole syndrome phenotype in apparently sporadic melanoma?

BACKGROUND: Although patients from some families with the atypical mole syndrome (AMS) are predisposed to melanoma, it is not known how frequently this underlies the apparently sporadic presentation of melanoma. OBJECTIVE: This study was designed to estimate the frequency of the AMS (dysplastic nevus or FAMMM syndrome) phenotype in a population-based study of patients with melanoma in the United Kingdom and to determine the prevalence of the phenotype in the relatives of the patients with AMS. METHODS: The nevi of patients with melanoma and controls in a case-control study, and the nevi of some relatives of patients with AMS, were examined. An AMS scoring system was used to define the AMS phenotype. The familiarity of the AMS phenotype was then determined by screening first-degree relatives of persons with the AMS phenotype. RESULTS: Forty of 266 (15%) of patients with melanoma had the AMS phenotype compared with 7 of 305 (2%) of the controls (odds ratio 7.5, 95% confidence interval 3.4-16.8). Screening of relatives of patients with melanoma who had the AMS phenotype identified the same phenotype within the families, providing evidence that the AMS phenotype in patients with melanoma is predictive of the same phenotype in relatives, consistent with so-called type D1 AMS. CONCLUSION: The AMS phenotype is a potent risk factor for cutaneous melanoma and is present in 15% of patients. Melanoma in the United Kingdom is more common in women than in men, but the AMS phenotype was more frequent in men in this study. It is our hypothesis that the effects of the putative AMS gene are diluted by environmental factors in U.K. women. Screening of relatives of patients with melanoma who have the AMS phenotype may identify persons at increased risk of melanoma.

Adolescent↗
PubMed1992

Muscle filament lattices and stretch-activation: the match-mismatch model reassessed.

A mechanism for the observed enhanced stretch-activation phenomenon in insect asynchronous flight muscles has been postulated and developed in terms of the matched helical structures of the actin and myosin filaments in the asynchronous flight muscles of Lethocerus. It was suggested that at different sarcomere lengths with different filament overlaps there would be a changing probability of myosin crossbridge attachment to actin according to whether there was match or mismatch between the myosin and actin arrays. Evidence is provided here that, when Lethocerus structure is considered in detail, the explanation appears to fail. Results on other insect asynchronous flight muscles of different structure (e.g. Apis) also seem to contradict the match-mismatch model. All striated muscle types considered here (fish, frog, Lethocerus, Apis, blowfly) appear to be designed to give constant probability of crossbridge attachment to actin as the filaments move axially, apart from the well-known effects of changing total filament overlap. Alternative stretch-activation mechanisms are considered, especially in terms of the unusual thin filament regulatory system in some insect asynchronous flight muscles.

Actin Cytoskeleton↗