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Biomedical subjects

J F Keown

Publications and source records attributed to J F Keown.

15 recordsLinked to original sources
PubMed2002

Relationships among severity and duration of clinical mastitis and sire transmitting abilities for somatic cell score, udder type traits, productive life, and protein yield.

The objective of this study was to determine the relationships among severity and duration of clinical mastitis during first and second lactation and sire transmitting abilities for somatic cell score, udder type traits, productive life, and protein yield. Recording of clinical episodes began at first parturition for 1704 Holstein cows (in six Pennsylvania herds and one Nebraska herd) and continued into second lactation for 1055 of these cows. A total of 456 cows (sired by 168 bulls) had at least one clinical episode during first lactation, and 230 cows (sired by 100 bulls) had at least one clinical episode during second lactation. A severity code from 1 (normal milk) to 5 (acute systemic mastitis) was assigned daily (for up to 30 d after detection) to all quarters that had clinical mastitis. Only the severity codes for the first clinical episode to occur during first and second lactation are considered here. The initial and maximum severity codes, as well as the natural logarithms of both the sum of severity codes that were above normal (> 1) and the total days severity codes were above normal were regressed on herd (a classification variable), age at first calving, days in milk at clinical detection, and sire transmitting abilities taken one at a time. Linear and nonlinear effects were estimated for sire transmitting abilities. Separate analyses were conducted on dependent variables that considered severity and duration of clinical mastitis from: all organisms, coagulase-negative staphylococci, coliform species, streptococci other than Streptococcus agalactiae, and the most common environmental organisms (coliform species and streptococci other than Streptococcus agalactiae). Daughters of sires that transmit the lowest somatic cell score had the least severe and shortest clinical episodes from environmental organisms during first lactation. Selection for lower somatic cell score may reduce the severity and duration of clinical episodes from environmental organisms during first lactation.

Animals↗
PubMed2002

Genetic parameters and responses of linear type, yield traits, and somatic cell scores to divergent selection for predicted transmitting ability for type in Holsteins.

The objective was to examine the direct and correlated responses of linear type, yield traits, and somatic cell scores (SCS) to divergent selection for predicted transmitting ability for type (PTAT) in Holsteins, while maintaining selection for yield traits across lines. For four generations, one-half of the University of Nebraska research Holstein herd was bred to Holstein sires with PTAT > 1.50 and the other half to sires with PTAT < 1.25, with nearly equal predicted transmitting abilities for yield traits for both groups. Estimates of genetic and residual correlations and heritabilities were obtained from REML estimates of (co)variance components. Model for type traits included fixed effect of date cows were classified, effects of age in days at freshening, and stage of lactation at classification. Year-season when cows freshened was fixed effect in model for yield and SCS. Animal genetic and residual effects were random. Final score, milk, fat, and protein yields, and SCS had heritability estimates of 0.38, 0.13,0.22, 0.09, and 0.38, respectively. Heritability estimates for type traits ranged from 0.04 to 0.52. Estimates of genetic correlations of final score with SCS and milk, fat, and protein yields were -0.64, 0.01, -0.18, and 0.06, respectively. Estimates of genetic correlations among linear type traits ranged from -0.77 to 1.00. Means of estimated breeding values for final score, stature, strength, body depth, fore udder attachment, rear udder height and width, udder cleft, udder depth, and front teat placement were significantly different between lines in the third generation. Milk, fat, and protein yields were not significantly different between lines in third generation, whereas SCS was significantly different. Estimate of genetic correlation between final score and SCS suggest that selection on PTAT would result in a change for SCS. In this study, divergent selection on PTAT of sires had a significant effect on udder and body traits, but little or no effect on feet and leg traits.

Animals↗
PubMed2000

Parameter estimates for genetic effects on carcass traits of Korean native cattle.

Data (n = 1,746) collected from 1985 through 1995 on Korean Native Cattle by the National Livestock Research Institute of Korea were used to estimate genetic parameters for marbling score, dressing percentage, and longissimus muscle area, with backfat thickness, slaughter age, or slaughter weight as covariates. Estimates were obtained with REML. Model 1 included animal genetic and residual random effects. Model 2 was extended to include an uncorrelated random effect of the dam. Model 3 was based on Model 1 but also included sire x region x year-season interaction effects. Model 4 combined Models 2 and 3. All models included fixed effects for region x year-season and age of dam x sex combinations. From single-trait analyses, estimates of heritability with covariates to adjust for backfat thickness, slaughter age, and slaughter weight from Model 4 were, respectively, .10, .08, and .01 for marbling score; .09, .12, and .16 for dressing percentage; and .18, .17, and .24 for longissimus muscle area. From three-trait analyses, estimates of genetic correlations between marbling score and dressing percentage, marbling score and longissimus muscle area, and dressing percentage and longissimus muscle area were, respectively, -.99, .20, and -.11 with backfat thickness as covariate; -.88, .47, and .01 with slaughter age as covariate; and -.03, .39, and .91 with slaughter weight as covariate. Results of this study suggest that choice of covariate (backfat thickness, slaughter age, or slaughter weight) for the model seems to be important for carcass traits for Korean Native Cattle. Including sire x region x year-season interaction effects in the model for marbling score and dressing percentage may be important because whether sire x region x year-season interaction effects were in the model affected estimates of other variance components for the three carcass traits. Whether the maternal effect was in the model had little effect on estimates of other parameters. With backfat thickness and slaughter age end points, selection for increasing marbling score would be expected to result in decreasing dressing percentage for Korean Native Cattle. With slaughter weight as a covariate for end point, increased longissimus muscle area would be associated with increased dressing percentage, and increased marbling score would be related to increased longissimus muscle area. The differences in estimates associated with choice of end point, however, need further study.

Animals↗
PubMed2000

Parameter estimates for direct and maternal genetic effects on yearling, eighteen-month, and slaughter weights of Korean native cattle.

Data collected by the National Livestock Research Institute of the Rural Development Administration of Korea were used to estimate genetic parameters for yearling (YWT, n = 5,848), 18-mo (W18, n = 4,585), and slaughter (SWT, n = 2,279) weights for Korean Native cattle. Nine animal models were used to obtain REML estimates of genetic parameters: DP-2 included genetic, uncorrelated dam, and residual random effects; DQ-2 included genetic, sire x region x year-season interaction, and residual random effects; DPQ-2 was based on DQ-2 but included both interaction and dam effects; DMP-2 was based on DP-2 but with dam effect partitioned to include maternal genetic and permanent environmental effects; and DMPQ-2 was based on DMP-2 but also included sire interaction effects. Those five models included two fixed factors: region x year-season and age of dam x sex effects. Models DP-3, DQ-3, DPQ-3, and DMPQ-3 were based on DP-2, DQ-2, DPQ-2, and DMPQ-2 but included as a third fixed factor whether or not identification of the sire was known. Estimates of heritability with DMPQ-3 for YWT, with DPQ-3 for W18 and SWT when analyzed with single-trait analyses were .14, .11, and .17, respectively, and were nearly the same with bivariate analyses. Estimate of maternal heritability for YWT from single-trait analysis was .04, with estimates for other traits near zero. For bivariate analyses, the estimate for YWT was .01. With single trait analysis, estimate of the direct-maternal genetic correlation for YWT was negative (-.81). Estimates of direct genetic correlations between YWT and W18, YWT and SWT, and W18 and SWT were .99, 1.00, and .97, respectively. Estimates of environmental correlations varied from .60 to .81; the largest was between W18 and SWT. Including a fixed factor for whether sire identification was missing or not missing reduced the estimate of heritability for slaughter weight. The results suggest that the sire x region x year-season interaction is important for yearling weight and may be needed in a model for slaughter weight. Maternal effects may be of slight importance for yearling weight but of no importance for W18 and SWT. Models for national cattle evaluations for Korean Native cattle for YWT should be considered that include maternal genetic and permanent environmental as well as sire x region x year-season interaction effects, but those effects seem not to be needed for models for W18 and SWT. Not much reranking of sires occurred when ranked was based on the different models for W18 and SWT.

Animals↗
PubMed2000

Heritability of clinical mastitis incidence and relationships with sire transmitting abilities for somatic cell score, udder type traits, productive life, and protein yield.

The objective of this study was to determine the relationships among daughter clinical mastitis during first and second lactations and sire transmitting abilities for somatic cell score, udder type traits, productive life, and protein yield. Data on clinical mastitis during first lactation were available for 1795 daughters (in six Pennsylvania herds, one Minnesota herd, and one Nebraska herd) of 283 Holstein sires. Data on clinical mastitis during second lactation were available for 1055 of these daughters. A total of 479 cows had 864 clinical episodes during first lactation, and 230 cows had 384 clinical episodes during second lactation. Clinical mastitis incidence and the total number of clinical episodes during each lactation were regressed on herd-season of calving (a classification variable), age at first calving, lactation length, and sire transmitting abilities taken one at a time. Linear effects, nonlinear effects, and odds ratios were estimated for sire transmitting abilities. Separate analyses were conducted on dependent variables that considered clinical mastitis from: all organisms, coagulase-negative staphylococci, coliform species, streptococci other than Streptococcus agalactiae, and the most common environmental organisms (coliform species and streptococci other than Streptococcus agalactiae). Heritability of clinical mastitis ranged from 0.01 to 0.42. Daughters of sires that transmit the lowest somatic cell score had the lowest incidence of clinical mastitis and the fewest clinical episodes during first and second lactations. Daughters of sires that transmit longer productive life, shallower udders, deeper udder cleft, and strongly attached fore udders had either fewer clinical episodes or lower clinical mastitis incidence during first and second lactations. The incidence of clinical mastitis and the number of clinical episodes per lactation may be reduced by selection for lower somatic cell score, longer productive life, shallower udders, deeper udder cleft, or strongly attached fore udders.

Animals↗
PubMed2000

Bias in genetic evaluations by records of cows treated with bovine somatotropin.

Records from Dairy Records Management Systems in Raleigh were used to estimate effects of bovine somatotropin (bST) treatment and to predict breeding values for milk production traits. The data comprised 5245 test-day records of bST-treated cows and 126,223 test-day records of untreated cows in first lactation for milk, fat, and protein yields. Fixed effects of bST treatment were estimated from test-day animal models with herd-test-date as another fixed factor. Percentage increases due to bST treatment ranged from 7 to 8% for test-day milk, fat, and protein yields. Random regression coefficients for additive genetic and permanent environmental effects were included in the model. To assess the potential for bias in genetic evaluations when some and not all cows are treated with bST, breeding values predicted by the test-day model with and without effects of bST treatment were compared for cows and sires. Correlations between breeding values predicted from models with and without effects of bST treatment were 0.99. However, relatively large bias was found for individual animals. This result suggests that bias in genetic evaluation caused by ignoring bST treatment may be significant.

Animals↗
PubMed1999

Variance caused by cytoplasmic line and sire by herd interaction effects for milk yield considering estimation bias.

A total of 138,869 lactation milk yields (305 d, milked twice daily, mature equivalent) from the first three parities of 68,063 New York Holstein cows were used to estimate variance components that were due to additive direct genetic effects, cow permanent environmental effects (cow within sire for sire model), sire by herd interaction effects, and cytoplasmic line effects. The original data were assigned to 10 random samples, which were each analyzed using an animal model and a sire model. From each sample of original data, 20 other samples were analyzed with levels assigned randomly to cytoplasmic and interaction effects (data with randomly simulated levels). Ten of those samples were analyzed with an animal model and 10 with a sire model. The models also included fixed effects of herd-year-seasons. For the animal model and sire model, average fractions of phenotypic variance and average standard errors were, respectively, for additive direct genetic effects 0.300 (0.029) and 0.228 (0.040) for original data and 0.325 (0.025) and 0.262 (0.039) for data with randomly simulated levels. For cow permanent environmental effects the respective averages were 0.242 (0.024) and 0.444 (0.014) for original data and 0.235 (0.025) and 0.492 (0.016) for data with randomly simulated levels. The averages for sire by herd interaction effects were 0.015 (0.008) and 0.018 (0.007) for original data and 0.003 (0.007) and 0.004 (0.009) for data with randomly simulated levels. For cytoplasmic line effects, the respective averages were 0.011 (0.007) and 0.043 (0.008) for original data and 0.003 (0.006) and 0.003 (0.007) for data with randomly simulated levels. The differences between estimates of variance components for original data and data with randomly simulated levels suggest that estimates of fractions of total variance caused by sire by herd interaction and cytoplasmic effects estimated with REML may be biased upward by 0.003 to 0.004.

Analysis of Variance↗
PubMed1998

Variances of direct genetic effects, maternal genetic effects, and cytoplasmic inheritance effects for milk yield, fat yield, and fat percentage.

Milk yield, fat yield, and fat percentage during the first three lactations were studied using New York Holsteins that were milked twice daily over a 305-d, mature equivalent lactation. Those data were used to estimate variances from direct and maternal genetic effects, cytoplasmic effects, sire by herd interaction, and cow permanent environmental effects. Cytoplasmic line was traced to the last female ancestor using DHI records from 1950 through 1991. Records were 138,869 lactations of 68,063 cows calving from 1980 through 1991. Ten random samples were based on herd code. Samples averaged 4926 dams and 2026 cytoplasmic lines. Model also included herd-year-seasons as fixed effects and genetic covariance for direct-maternal effects. Mean estimates of the effects of maternal genetic variances and direct-maternal covariances, as fractions of phenotypic variances, were 0.008 and 0.007 for milk yield, 0.010 and 0.010 for fat yield, and 0.006 and 0.025 for fat percentage, respectively. Average fractions of variance from cytoplasmic line were 0.011, 0.008, and 0.009 for milk yield, fat yield, and fat percentage. Removal of maternal genetic effects and covariance for maternal direct effects from the model increased the fraction of direct genetic variance by 0.014, 0.021, and 0.046 for milk yield, fat yield, and fat percentage; little change in the fraction was due to cytoplasmic line. Exclusion of cytoplasmic effects from the model increased the ratio of additive direct genetic variance to phenotypic variance by less than 2%. Similarly, when sire by herd interaction was excluded, the ratio of direct genetic variance to phenotypic variance increased 1% or less.

Animals↗
PubMed1998

Estimation of relative economic value for herd life of dairy cattle from profile equations.

Lifetime records of 122,679 cows from 7557 herds, obtained from Mid States Dairy Records Processing Center (Ames, IA), were used to determine net income and net income for the planning horizon. With a planning horizon of five lactations for each cow, the estimated profit from the replacements was credited to each cow not surviving until fifth calving. Net income was defined as lifetime income minus costs. Net income for the planning horizon was defined as net income plus profit from replacements within the planning horizon. Income was from the sale of milk, calves, and culled cows. Costs were included for heifer rearing, feed, labor, and breeding. Longer herd life yielded greater profit for net income and net income for the planning horizon. The rate of increase in profit for longer herd life was reduced for net income for the planning horizon, which accounts for profit from cows replacing a culled cow compared with profit from net income. The relative economic value (phenotypic standard deviation basis) of production to herd life was 0.18:1 for net income and 0.46:1 for net income for the planning horizon. The relative value for herd life was overestimated by about 2.5 times when profit from replacements was not considered. Values for production relative to herd life increased for high milk prices and low feed prices. Lower prices for culled cows in combination with high prices for milk and feed increased the relative economic value of production.

Animal Feed↗
PubMed1996

Effect of variance of interaction effects of sire and herd on selection for milk and fat yield.

The animal model for genetic evaluations of dairy cattle by the USDA currently includes a term for interaction effects of sire and herd. The relative magnitude of the variance of that effect was established in the 1960s as 14% of the total variance, but recent research has shown that the proportion is 2% or less. This report compared EBV using either the 14% or the actual estimate from 20 samples of records from herds in California, New York, and Pennsylvania. From 6 to 22% of bulls or cows selected for milk and fat yields based on evaluation with 14% of the total variance would not be selected using the sample estimates, depending on selection intensity, region, and whether only first or up to three lactations were used in the evaluations. Nevertheless, the average EBV of the bulls and cows selected based on 14% of the total variance were only slightly less than for those selected on 2%. This pilot research suggests that further study of the national data be done to establish the appropriate proportion of variance from interaction effects of sire and herd to use with national evaluations. Kinds of evaluations of bulls and ages of cows and bulls should be considered.

Animals↗
PubMed1995

Variance of interaction effects of sire and herd for yield traits of Holsteins in California, New York, and Pennsylvania with an animal model.

An animal model with a REML algorithm was used to estimate variances of additive genetic effects and interaction effects of sire and herd. Milk and fat yields were analyzed for first, second, and third lactations of Holsteins from California, New York, and Pennsylvania. Twenty samples of data were used in the study: 10 from California, 4 from New York, and 6 from Pennsylvania. Mean number of lactations per sample was 36,820 from 18,189 cows in 156 herds. Mean fractions of phenotypic variance of interaction effects of sire and herd for milk and fat yields were .015 and .019 for first lactation and .019 and .021 for all (up to three) lactations rather than the .14 used for national genetic evaluations in the US. Mean heritability estimates for milk and fat yields were .26 and .24 for first lactation and .21 and .21 for all lactations in California and .34 and .35 for first lactations and .28 and .29 for all lactations in New York. Sums of variances of permanent environmental and interaction effects of sire and herd were similar to those used for national genetic evaluations in the US. Analysis of another 10 samples from California and 10 samples from New York showed only slightly different fractions of phenotypic variance for milk yield for interaction effects of sire by herd, sire by herd by year, and sire by herd by year by season: .023, .027, and .037 for California and .023, .017, and .023 for New York, respectively.

Animals↗
PubMed1995

Estimates using an animal model of (co)variances for yields of milk, fat, and protein for the first lactation of Holstein cows in California and New York.

First lactation yields of milk, fat, and protein from Holstein cows in New York and California were used to obtain REML estimates of (co)variances for yield traits using a multitrait animal model. Data from each state were split randomly into 10 samples, averaging 5504 cows per sample from California and 5078 from New York. Mean heritability estimates for milk, fat, and protein yields were .30 +/- .02, .31 +/- .01, and .29 +/- .01 for California data and .33 +/- .01, .35 +/- .01, and .30 +/- .01 for New York data. Averages of genetic correlation estimates for California and New York were .63 +/- .01 and .52 +/- .02 between milk and fat, .84 +/- .01 and .83 +/- .01 between milk and protein, and .73 +/- .01 and .68 +/- .01 between fat and protein. Estimates of environmental correlations were larger than estimates of genetic correlations. Mean estimates of phenotypic correlations for California and New York were .75 +/- .01 and .72 +/- .01 between milk and fat, .92 +/- .01 and .91 +/- .01 between milk and protein, and .81 +/- .01 and .79 +/- .01 between fat and protein yields. On average, these estimates agree with those obtained from animal models with limited rounds of iteration for small data files.

Animals↗
PubMed1986

Effect of days carried calf, days dry, and weight of first calf heifers on yield.

Effects of days carried calf, days dry, and weight of first calf heifers were studied using records of Holstein cows processed at the Northeast Dairy Records Processing Laboratory between July 1980 and August 1984. Multiplicative factors were estimated for days carried calf for milk, fat, and protein using a model that adjusted for the age-month and herd-year of freshening. Factors developed show a close relationship between protein and milk with fat factors being smaller. Factors also are smaller than others reported in the literature. First lactation factors differed from second and third lactation factors. Analysis of days dry indicated that optimum number of days dry between lactations 1 and 2, 2 and 3, and 3 and 4 for maximized subsequent yield was 51 to 60 d dry for all lactations. Calculated F values showed greater significance for days dry than age-month of freshening. Optimum freshening weight of a first calf heifer to maximize first lactation milk yield is between 544 and 567 kg. The F values for weight at freshening were more significant than age-month of freshening.

Animals↗
PubMed1984

Evaluation of the genotoxic and embryotoxic potential of chlorpyrifos and its metabolites in vivo and in vitro.

The genotoxicity and embryotoxicity of chlorpyrifos (CPF) and two metabolites were evaluated using the chick embryo, Chinese hamster ovary cells, and by examining blastocysts from superovulated cows crossed to chlorpyrifos-treated bulls. Chlorpyrifos and metabolites were dissolved in acetone and administered to 3-day embryos by the air cell method. The LD50 was 1,500 micrograms/embryo when mortality was checked through and including 17 days of development. The metabolites were more embryotoxic than the parent compound, CPF. Chlorpyrifos and metabolites did not increase the sister chromatid exchange (SCE) frequency above background at any dosage in the 3-day chick embryo assay. Similarly, none of these compounds increased SCE frequencies in three-point dosage tests (1, 10, 100 micrograms/ml) using Chinese hamster ovary cells. Controls in these assays consisted of the solvent carrier acetone (7.0 +/- 2.5 SCE/cell) and 8.6 micrograms/ml methyl methane sulfonate (30.5 +/- 7.4 SCE/cell). Studies of bovine blastocysts obtained from superovulated cows crossed with Dursban 44 treated bulls did not reveal evidence of chromosome aberrations or developmental anomalies associated with pesticide application. However, reproductive performance of breeders may be subnormal as a result of severe poisoning. This underscores the limitations of short-term assays and emphasizes the need to perform thorough toxicological assays of a chemical according to actual usage patterns in the species of concern.

Animals↗