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Biomedical subjects

J A Pearce

Publications and source records attributed to J A Pearce.

At least 19 recordsLinked to original sources

Geochemical tracing of Pacific-to-Atlantic upper-mantle flow through the Drake passage.

The Earth's convecting upper mantle can be viewed as comprising three main reservoirs, beneath the Pacific, Atlantic and Indian oceans. Because of the uneven global distribution and migration of ridges and subduction zones, the surface area of the Pacific reservoir is at present contracting at about 0.6 km2 x y(r-1), while the Atlantic and Indian reservoirs are growing at about 0.45 km2 x yr(-1) and 0.15 km2 x yr(-1), respectively. Garfunkel and others have argued that there must accordingly be net mantle flow from the Pacific to the Atlantic and Indian reservoirs (in order to maintain mass balance), and Alvarez further predicted that this flow should be restricted to the few parts of the Pacific rim (here termed 'gateways') where there are no continental roots or subduction zones that might act as barriers to shallow mantle flow. The main Pacific gateways are, according to Alvarez, the southeast Indian Ocean, the Caribbean Sea and the Drake passage. Here we report geochemical data which confirm that there has been some outflow of Pacific mantle into the Drake passage--but probably in response to regional tectonic constraints, rather than global mass-balance requirements. We also show that a mantle domain boundary, equivalent to the Australian-Antarctic discordance, must lie between the Drake passage and the east Scotia Sea.

Journal Article↗

Modelling infrared temperature measurements: implications for laser irradiation and cryogen cooling studies.

The use of thermographic techniques has increased as infrared detector technology has evolved and improved. For laser-tissue interactions, thermal cameras have been used to monitor the thermal response of tissue to pulsed and continuous wave irradiation. It is important to note that the temperature indicated by the thermal camera may not be equal to the actual surface temperature. It is crucial to understand the limitations of using thermal cameras to measure temperature during laser irradiation of tissue. The goal of this study was to demonstrate the potential difference between measured and actual surface temperatures in a quantitative fashion using a ID finite difference model. Three ablation models and one cryogen spray cooling simulation were adapted from the literature, and predictions of radiometric temperature measurements were calculated. In general, (a) steep superficial temperature gradients, with a surface peak, resulted in an underestimation of the actual surface temperature, (b) steep superficial temperature gradients, with a subsurface peak, resulted in an overestimation, and (c) small gradients led to a relatively accurate temperature estimate.

Body Temperature↗

Development of a multifrequency conductance catheter-based system to determine LV function in mice.

Transgenic mice offer a valuable way to relate gene products to phenotype, but the ability to assess the cardiovascular phenotype with pressure-volume analysis has lagged. Conductance measurement offers a method to generate an instantaneous left ventricular (LV) volume signal in the mouse but has been limited by the volume signal being a combination of blood and LV muscle. We hypothesized that by developing a mouse conductance system that operates at several simultaneous frequencies, we could identify and correct for the myocardial contribution to the instantaneous volume signal. This hypothesis is based on the assumption that mouse myocardial conductivity will vary with frequency, whereas mouse blood conductivity will not. Consistent with this hypothesis, we demonstrated that at higher excitation frequency, greater end-diastolic and end-systolic conductance are detected, as well as a smaller difference between the two. We then empirically solved for LV blood volume using two frequencies. We combined measured resistivity of mouse myocardium with an analytic approach and extracted an estimate of LV blood volume from the raw conductance signal. Development of a multifrequency catheter-based system to determine LV function could be a tool to assess cardiovascular phenotype in transgenic mice.

Animals↗

Issues in modeling thermal alterations in tissues.

Thermal injury in living tissues is commonly modeled as a rate process in which cell death is interpreted to occur as a function of a single kinetic process. Experimental data indicate that multiple rate processes govern the manifestation of injury and that these processes may act over a broad spectrum of time domains. Injury is typically computed as a dimensionless function (omega) of the temperature time history via an Arrhenius relationship to which numerical values are assigned based on defined threshold levels of damage. However, important issues central to calculation and interpretation of the omega function remain to be defined. These issues include the following: how is temperature identified in time and space within a tissue exposed to thermal stress; what is the biophysical and physiological meaning of a quantitative value for omega; how can omega be quantified in an experimental system; how should omega be scaled between graded levels of injury; and what are the differences in injury kinetics between unit volume- and unit surface area-governed processes of energy deposition into tissue to cause thermal stress? This paper addresses these issues with the goal of defining a more rigorous and comprehensive standard for modeling thermal injury in tissues.

Animals↗

Inhibitory action of a truncated derivative of the amphibian skin peptide dermaseptin s3 on Saccharomyces cerevisiae.

The inhibitory activity of a truncated derivative of the natural amphibian skin peptide dermaseptin s3-(1-16)-NH2 [DS s3 (1-16)] against Saccharomyces cerevisiae was studied. Significant growth inhibition was observed after exposure to 3.45 microgram of the peptide per ml at pH 6.0 and 7.0, with complete growth inhibition occurring at 8.63 microgram of peptide per ml for all pH values tested. Using confocal scanning laser microscopy, we have shown that DS s3 (1-16) disrupted the yeast cell membrane resulting in the gross permeabilization of the cell to the nuclear stain ethidium bromide. However, the principal inhibitory action of the peptide was not due to disruption of intracellular pH homeostasis. Instead, growth inhibition by the peptide correlated with the efflux of important cellular constituents such as ADP, ATP, RNA, and DNA into the surrounding medium. The combination of DS s3 (1-16) with mild heating temperatures as low as 35 degreesC significantly enhanced the inhibitory effect of the peptide (8.63 microgram/ml), and at 45 degreesC greater than 99% of the population was killed in 10 min. In summary, a derivative of a natural antimicrobial peptide has potential, either alone or in combination with mild heating, to prevent the growth of or kill spoilage yeast.

Amino Acid Sequence↗

Rate process model for arterial tissue thermal damage: implications on vessel photocoagulation.

A numerical model for thermal damage to human arterial tissue is presented, based on protein denaturation kinetics. The model involves determination of coefficients of rate processes A & delta E, which are tissue type-dependent (arterial tissue in this study), and definition of threshold damage. A feedback-controlled constant surface temperature device was used to induce 80 coagulative lesions of arterial human tissue ranging in temperature from 66 degrees C to 76 degrees C and in duration from 15 to 1,500 seconds. The measured coefficients were determined to be A = 5.6 x 10(63) s-1 and delta E = 430 KJ mole-1. These numerical values closely approximate the coefficients of the rate process for denaturation of collagen molecules. These and other histological observations strongly suggest collagen to be the primary coagulating component of arterial tissue at the onset of thermal coagulative damage. The ability of this model to predict onset of tissue coagulation during laser coagulation was studied using 10 postmortem human arterial samples exposed to argon laser irradiation.

Algorithms↗

Morphological image processing techniques in thermographic imaging.

Mathematical morphology is a set algebra that defines some important new techniques in image processing. Morphological filters are closely related to order statistic and other nonlinear filters, but they are uniquely sensitive to shape. A morphological filter will preserve shapes similar to its structuring element shape while modifying dissimilar shapes. Most morphological filters are effective at removing both linear and nonlinear noise processes. However, the standard morphological operators introduce a statistical and deterministic bias to images. Fortunately, these operators exist in complementary pairs that are equally and oppositely biased. One way to alleviate the bias is to average the two complementary operators. The filters formed by such averages are the midrange filter (basic operators), the pseudomedian filter (singly compound operators) and the LOCO filter (doubly compound operators). In thermographic imaging, one often wishes to find exact temperatures or accurate isothermal contours. Therefore, techniques used to remove sensor noise and scanning artifact should not introduce bias. The LOCO filter that we have devised provides the shape control and noise suppression of morphological techniques without biasing the image. We will demonstrate the effects of different structuring element shapes on thermographic images of tissue heated by laser irradiation and electrosurgery.

Animals↗

Thermal damage quantification utilizing tissue birefringence color image analysis.

Decreased connective tissue or cardiac muscle birefringence in transmission polarizing microscopy is an observable measure of damaged tissue concentration. Accordingly, histologic monochrome images of thermally damaged tissue exhibiting decreased birefringence provide important information about the tissue thermal history. Thus, a damage quantification algorithm based on monochrome tissue images exhibiting decreased birefringence has been developed providing tissue damage values corresponding to estimated temperature distributions. In addition, utilizing 24-bit true color tissue images, epicardial birefringence color variations resulting from thermal exposures may also be observed. Therefore, image segmentation methods are used on the red, green, and blue color image components to isolate the epicardium, similarly allowing damage quantification on this tissue constituent.

Algorithms↗

Kinetic models of laser-tissue fusion processes.

Laser tissue fusion processes depend primarily on thermal denaturization of tissue collagen: the fibrils of apposed collagen strands apparently unravel under sufficient heat and re-entwine during the cooling phase. Excessive heating desiccates the fibers to a brittle state unsuitable for fusion while inadequate heating results in weak bonds. In all cases local heat transfer processes significantly affect, and may dominate, the thermal damage realized. Consequently, in addition to spot size power and beam activation time, the choice of laser wavelength is critically dependent on the particular vessel or tissue geometry (chiefly the thickness). We have conducted parametric studies on tissue welding laser activation protocols in transient finite difference numerical models which include tissue water vaporization processes in parallel with kinetic models of collagen and smooth muscle thermal damage. The results show the complex inter-relationship between laser parameters and tissue geometry which determines whether successful fusion may be obtained. The advantage of the numerical modeling approach is that individual physical processes may be studied singly to determine their relative importance.

Animals↗

A real-time multi-processor 3-D echocardiographic reconstruction system.

Real-time imaging systems involve high speed processing for a variety of algorithms. An important timing constraint in the design of a real-time reconstruction system is that each individual step must be performed at video-rate. We seek to develop a real-time system for 3-D reconstruction of cardiac structures from successive 2-D B-scan ultrasound images acquired using the Tilt Echo technique, developed by Buckey et al. This system will be used to evaluate cardiac performance parameters such as stroke volume and ventricular mass.

Algorithms↗

Limitations of a thermal camera in measuring surface temperature of laser-irradiated tissues.

Thermal cameras are used in research laboratories to measure tissue temperature during laser irradiation. This study was an evaluation of the accuracy of a 3-5 microns thermal camera and two 8-12 microns cameras in detecting the maximum temperatures of small targets. The size of the targets was within the range of laser spot diameters which are used for vessel welding, angioplasty, and dermatology. The response to a sharp thermal edge was measured and analyzed for the three cameras, which had a scanning rate of 30 frames per second. The response of the 3-5 microns camera to reference black body targets of different sizes was also studied. It was found that the detector system required an average of 2.44 microseconds to reach 90% of maximum step response for the 8-12 microns system and 5.85 microseconds for the 3-5 microns system. With a 3 x telescope and a 9.5 inch focal distance close-up lens, the 3-5 microns camera underestimated the temperature of targets smaller than 2.0 mm because of its slow detector response. Although the 8-12 microns camera provides more accurate measurements due to its faster detector response, it still underestimates the temperature of targets smaller than 900 microns, when similar magnification and focal distance are used. Methods to compensate for the inaccuracies are discussed, including empirical correction factors and the inverse filtering technique.

Calibration↗

Visualization of dynamic subcutaneous vasomotor response by computer-assisted thermography.

Infrared thermography is a noninvasive and nonionizing imaging modality which detects thermally significant subcutaneous blood vessels as linear heat patterns projected onto the skin surface. In clinical thermography, pseudo-colors are typically used to represent isothermal regions. However, pseudo-colors destroy the connectivity of vascular patterns since the intravenous temperature of a subcutaneous blood vessel varies along its length. This representation also confounds estimates of vessel boundary location since boundary information is rendered by temperature gradients, and not by isotherms. This paper describes two computer-assisted methodologies for the visualization of peripheral subcutaneous vasomotor events. The first approach, which utilizes a three-stage segmentation strategy based on edge detection, can visualize temperature differences of approximately 3.5 degrees C between the subcutaneous vessel boundaries and surrounding tissue. The second approach requires user interaction with an adaptive filtering algorithm that selectively enhances vascular patterns in the thermogram while decreasing background noise artifacts. The user interactively selects decision thresholds used by the algorithm to develop symbolic, axiomatic models of homogeneous and bimodal local contrast regions. The result of this trained filter is then employed in a technique called digital subtraction thermographic venography for the extraction of subcutaneous venous patterns. This second approach shows less ambiguity and higher sensitivity than the edge detection approach in resolving subtle temperature differences of approximately 1.2 degrees C between the vessel and surrounding tissue. Computer-processed frames from both of these approaches are used for the dynamic visualization of normal and pathological vasomotor responses to thermal challenges, thereby providing diagnostic visual cues which are unavailable in the original thermograms.

Algorithms↗

Unsupervised classification of cell images using pyramid node linking.

In this communication we describe a segmentation technique which combines two properties in an iterative and hierarchial matter to correctly segment and classify the given cell images. The technique is applied to digital images taken from microscope slides of cultured rat liver cells, and the goal is to classify these cells into one of three possible classes. The first class cells (I) are morphologically normal and stain the darkest. The second class cells (II) are slightly damaged showing both nuclear and cytoplasmic swelling with resultant lessening of staining affinity. The third class cells (III) are markedly damaged as demonstrated by the presence of cytoplasmic vacuolization, or are completely disintegrated. First class cells are classified by taking advantage of their staining affinity; the original gray level image is segmented into four gray levels. The darkest is then classified as type I. Type III cells are classified by using high business as a characteristic; the standard deviation of the original image is segmented into four business levels. The highest level is classified as type III cell. Assuming only the three cell types are present in any given image, the remaining non-background unclassified pixels are determined to belong to type II cells.

Algorithms↗

Ability of the Lapicque and Blair strength-duration curves to fit experimentally obtained data from the dog heart.

The objective of this study was to determine the ability of the empirical Lapicque and theoretically derived Blair expressions for excitation to fit experimentally obtained threshold current values to evoke a ventricular extrasystole using rectangular-wave stimuli applied to the dog heart. The data points were fitted to both expressions and the ability of each to predict the measured values was determined. The Levenberg-Marquardt (L-M) algorithm was used to fit the Lapicque and Blair expressions. The Lapicque data were also fitted to the linear charge-duration expression of Weiss (W). It was found that the ratio of the predicted to measured current was slightly different from one 0.95 (L-M) and 1.06 (W) for the Lapicque and 0.92 (L-M) for the Blair expression. Thus, there appears to be little difference between the ability of the expressions to fit the same experimentally obtained data. The L-M Lapicque fit is best for the short durations range; the Weiss-Lapicque fit overestimates in the short duration range and underestimates near chronaxie. The L-M Blair fit is best for the short duration range and poor for the durations near the membrane time constant.

Algorithms↗

Changes in birefringence as markers of thermal damage in tissues.

Light microscopy using polarized transmission illumination of routinely stained histologic sections shows changes of the native birefringence of certain tissue constituents when heated by laser irradiation or electrosurgical current. The naturally occurring birefringence of cardiac muscle disappears permanently when the muscle is frozen, thawed, and heated to temperatures in excess of 42 degrees C in vitro. This loss of birefringence is produced with temperatures at which other morphologic thermal changes are hard to detect; thus, it is a low-temperature tissue marker which can be used to observe the extent of thermal damage in tissues. Partial loss of the native birefringence of collagen occurs in canine urinary bladder coagulated by laser irradiation and pericardium heated with electrodes. In addition, thermally coagulated collagens have variable birefringence color shifts when compared to the adjacent unaffected collagens in stained histologic sections. The gradual birefringence color changes are seen at tissue temperatures higher than those at which the thermally induced hyalinization (coagulation) of collagen usually occurs (about 60-70 degrees C), but below those at which carbonization is seen (200+ degrees C). Birefringence changes can be measured to test mathematical models of thermal damage necessary for development of dosimetry models in medical applications of laser irradiation.

Animals↗

Heat generation in laser irradiated tissue.

Many medical applications involving lasers rely upon the generation of heat within the tissue for the desired therapeutic effect. Determination of the absorbed light energy in tissue is difficult in many cases. Although UV wavelengths of the excimer laser and 10.6 microns wavelength of the CO2 laser are absorbed within the first 20 microns of soft tissue, visible and near infrared wavelengths are scattered as well as absorbed. Typically, multiple scattering is a significant factor in the distribution of light in tissue and the resulting heat source term. An improved model is presented for estimating heat generation due to the absorption of a collimated (axisymmetric) laser beam and scattered light at each point r and z in tissue. Heat generated within tissue is a function of the laser power, the shape and size of the incident beam and the optical properties of the tissue at the irradiation wavelength. Key to the calculation of heat source strength is accurate estimation of the light distribution. Methods for experimentally determining the optical parameters of tissue are discussed in the context of the improved model.

Hot Temperature↗

A self-heated thermistor technique to measure effective thermal properties from the tissue surface.

A microcomputer based instrument to measure effective thermal conductivity and diffusivity at the surface of a tissue has been developed. Self-heated spherical thermistors, partially embedded in an insulator, are used to simultaneously heat tissue and measure the resulting temperature rise. The temperature increase of the thermistor for a given applied power is a function of the combined thermal properties of the insulator, the thermistor, and the tissue. Once the probe is calibrated, the instrument accurately measures the thermal properties of tissue. Conductivity measurements are accurate to 2 percent and diffusivity measurements are accurate to 4 percent. A simplified bioheat equation is used which assumes the effective tissue thermal conductivity is a linear function of perfusion. Since tissue blood flow strongly affects heat transfer, the surface thermistor probe is quite sensitive to perfusion.

Animals↗