Biomedical subjects

Ioannis Thanopulos

Publications and source records attributed to Ioannis Thanopulos.

6 recordsLinked to original sources

PubMed2006

Enhanced selectivity and yield in multichannel photodissociation reactions: application to CH3I.

We develop a method to improve the population transfer and final-channel control of multichannel photodissociation reactions. The method is applied to the photodissociation of methyl iodide, CH3(v)+I*(2P1/2)<--CH3I-->CH3(v)+I(2P3/2). Our method is based on simultaneously exciting many two-photon pathways that lead to the same final outcome, each proceeding via a different intermediate bound state. The selectivity of the final product state(s) is a result of coherently controlled interference between the quantum pathways. The improvement in the population transfer yield from the ground state to the selected dissociative channel(s) is made possible by executing the process in an adiabatic fashion.

Journal Article↗

PubMed2006

Docking of chiral molecules on twisted and helical nanotubes: nanomechanical control of catalysis.

We theoretically demonstrate the possibility of dynamically controlling catalysis by nanomechanical means. This novel methodology is based on switching the configuration (activity) of catalysts docked on nanoscale surfaces that are reversibly deformed. We test the approach by molecular dynamics simulations of an organic chiral catalyst that is docked by van der Waals coupling on twisted carbon nanotubes. Our results show that its catalytic activity is sharply correlated with the direction and amount of the nanotube twist. We also observe a small selectivity in docking of chiral molecules on straight helical nanotubes.

Adsorption↗

PubMed2005

Detection and automatic repair of nucleotide base-pair mutations by coherent light.

We show that phase-coherent optical techniques allow for the detection and automatic repair of mutations in nucleotide pairs. We demonstrate computationally that there is a laser pulse sequence that can detect the occurrence of a mutation caused by a double proton transfer between hydrogen-bonded nucleotide pairs and automatically repair it by converting the mutated nucleotide pair to the nonmutated one. The specific system chosen for this demonstration is the hydrogen-bonded 2-pyridone.2-hydroxypyridine dimer at typical internucleotide distances, a well-established model for tautomeric acid base pairs.

Base Pairing↗

PubMed2004

Theory of the two step enantiomeric purification of 1,3 dimethylallene.

An application of a recently proposed [P. Kral et al., Phys. Rev. Lett. 90, 033001 (2003)] two step optical control scenario to the purification of a racemic mixture of 1,3 dimethylallene is presented. Both steps combine adiabatic and diabatic passage phenomena. In the first step, three laser pulses of mutually perpendicular linear polarizations, applied in a "cyclic adiabatic passage" scheme, are shown to be able to distinguish between the L and D enantiomers due to their difference in matter-radiation phase. In the second step, which immediately follows the first, a sequence of pulses is used to convert one enantiomer to its mirror-imaged form. This scenario, which only negligibly populates the first excited electronic state, proves extremely useful for systems such as dimethylallene, which can suffer losses from dissociation and internal conversion upon electronic excitation. We computationally observe conversion of a racemic mixture of dimethylallene to a sample containing approximately 95% of the enantiomer of choice.

Journal Article↗

PubMed2004

Complete control of population transfer between clusters of degenerate states.

We present an analytic solution to the "degenerate quantum control problem," which enables the transfer of any desired fraction of population between arbitrary initial and final pure wave packets, made up of nearly degenerate energy eigenstates. It consists of two two-photon adiabatic passage steps, in which the population of the initial wave packet is first transferred, via a number of nondegenerate intermediate states, to a single eigenstate and then returned to a different target superposition state. We demonstrate the approach by executing a stepwise isomerization of three Jahn-Teller states of the Al3O molecule, where a proper optical coupling can easily be established.

Journal Article↗

PubMed2003

Two-step enantio-selective optical switch.

We present an optical "enantio-selective switch" that, in two steps, turns a ("racemic") mixture of left-handed and right-handed chiral molecules into the enantiomerically pure state of interest. The optical switch is composed of an "enantio-discriminator" and an "enantio-converter" acting in tandem. The method is robust, insensitive to decay processes, and does not require molecular preorientation. We demonstrate the method on the purification of a racemate of (transiently chiral) D2S2 molecules, performed on the nanosecond time scale.

Journal Article↗