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Ioannis A Kakadiaris

Publications and source records attributed to Ioannis A Kakadiaris.

10 recordsLinked to original sources

Intraclass retrieval of nonrigid 3D objects: application to face recognition.

As the size of the available collections of 3D objects grows, database transactions become essential for their management with the key operation being retrieval (query). Large collections are also precategorized into classes so that a single class contains objects of the same type (e.g., human faces, cars, four-legged animals). It is shown that general object retrieval methods are inadequate for intraclass retrieval tasks. We advocate that such intraclass problems require a specialized method that can exploit the basic class characteristics in order to achieve higher accuracy. A novel 3D object retrieval method is presented which uses a parameterized annotated model of the shape of the class objects, incorporating its main characteristics. The annotated subdivision-based model is fitted onto objects of the class using a deformable model framework, converted to a geometry image and transformed into the wavelet domain. Object retrieval takes place in the wavelet domain. The method does not require user interaction, achieves high accuracy, is efficient for use with large databases, and is suitable for nonrigid object classes. We apply our method to the face recognition domain, one of the most challenging intraclass retrieval tasks. We used the Face Recognition Grand Challenge v2 database, yielding an average verification rate of 95.2 percent at 10-3 false accept rate. The latest results of our work can be found at http://www.cbl.uh.edu/UR8D/.

Algorithms↗

Automatic identification of the left ventricle in cardiac cine-MR images: dual-contrast cluster analysis and scout-geometry approaches.

PURPOSE: To evaluate the technical feasibility of two approaches--dual-contrast (DC) cluster analysis, and scout geometry (SG)--for automatic identification of the left ventricular (LV) cavity in short-axis (SA) cine-MR images. MATERIALS AND METHODS: The DC algorithm uses Fuzzy C-Means (FCM) cluster analysis of SA images from a black-blood double-inversion recovery turbo spin-echo (dual IR TSE) sequence, and bright-blood images from a steady-state free precession (SSFP) sequence. The SG algorithm employs geometric information from scout views (i.e., vertical long-axis (VLA) and four-chamber (4CH) views). Both algorithms incorporate additional geometric continuity constraints along with LV region segmentation to identify the LV. The performance of both algorithms was compared on images of eight healthy volunteers, and the SG algorithm was further evaluated on images of 13 clinical patients. RESULTS: The DC algorithm identified the LV in 89% (72/75 at end-diastole (ED) and 47/59 at end-systole (ES)) of the images from healthy volunteers, compared to 98% (74/75 at ED and 57/59 at ES) by the SG algorithm. Both methods are robust against interslice signal variations and misalignment. The DC method suffers from misregistration between the dual IR TSE and SSFP images near the apex at ES. The SG method identified the LV in 91% (112/122 at ED and 91/102 at ES) of the images from clinical patients. CONCLUSION: The SG method requires no additional scan, is robust and accurate, and performs better than the DC method for automatic identification of the LV.

Adult↗

Flexible fitting in 3D-EM guided by the structural variability of protein superfamilies.

A method for flexible fitting of molecular models into three-dimensional electron microscopy (3D-EM) reconstructions at a resolution range of 8-12 A is proposed. The approach uses the evolutionarily related structural variability existing among the protein domains of a given superfamily, according to structural databases such as CATH. A structural alignment of domains belonging to the superfamily, followed by a principal components analysis, is performed, and the first three principal components of the decomposition are explored. Using rigid body transformations for the secondary structure elements (SSEs) plus the cyclic coordinate descent algorithm to close the loops, stereochemically correct models are built for the structure to fit. All of the models are fitted into the 3D-EM map, and the best one is selected based on crosscorrelation measures. This work applies the method to both simulated and experimental data and shows that the flexible fitting was able to produce better results than rigid body fitting.

Amino Acid Sequence↗

Automated left ventricular segmentation in cardiac MRI.

We present an automated left ventricular (LV) myocardial boundary extraction method. Automatic localization of the LV is achieved using a motion map and an expectation maximization algorithm. The myocardial region is then segmented using an intensity-based fuzzy affinity map and the myocardial contours are extracted by cost minimization through a dynamic programming approach. The results from the automated algorithm compared against the experienced radiologists using Bland and Altman analysis were found to have consistent mean bias of 7% and limits of agreement comparable to the inter-observer variability inherent in the manual method.

Adult↗

Image denoising using a tight frame.

We present a general mathematical theory for lifting frames that allows us to modify existing filters to construct new ones that form Parseval frames. We apply our theory to design nonseparable Parseval frames from separable (tensor) products of a piecewise linear spline tight frame. These new frame systems incorporate the weighted average operator, the Sobel operator, and the Laplacian operator in directions that are integer multiples of 45 degrees. A new image denoising algorithm is then proposed, tailored to the specific properties of these new frame filters. We demonstrate the performance of our algorithm on a diverse set of images with very encouraging results.

Algorithms↗

Image segmentation based on fuzzy connectedness using dynamic weights.

Traditional segmentation techniques do not quite meet the challenges posed by inherently fuzzy medical images. Image segmentation based on fuzzy connectedness addresses this problem by attempting to capture both closeness, based on characteristic intensity, and "hanging togetherness," based on intensity homogeneity, of image elements to the target object. This paper presents a modification and extension of previously published image segmentation algorithms based on fuzzy connectedness, which is computed as a linear combination of an object-feature-based and a homogeneity-based component using fixed weights. We provide a method, called fuzzy connectedness using dynamic weights (DyW), to introduce directional sensitivity to the homogeneity-based component and to dynamically adjust the linear weights in the functional form of fuzzy connectedness. Dynamic computation of the weights relieves the user of the exhaustive search process to find the best combination of weights suited to a particular application. This is critical in applications such as analysis of cardiac cine magnetic resonance (MR) images, where the optimal combination of affinity component weights can vary for each slice, each phase, and each subject, in spite of data being acquired from the same MR scanner with identical protocols. We present selected results of applying DyW to segment phantom images and actual MR, computed tomography, and infrared data. The accuracy of DyW is assessed by comparing it to two different formulations of fuzzy connectedness. Our method consistently achieves accuracy of more than 99.15% for a range of image complexities: contrast 5%-65%, noise-to-contrast ratio of 6%-18%, and bias field of four types with maximum gain factor of up to 10%.

Algorithms↗

Hybrid segmentation framework for tissue images containing gene expression data.

Associating specific gene activity with functional locations in the brain results in a greater understanding of the role of the gene. To perform such an association for the over 20,000 genes in the mammalian genome, reliable automated methods that characterize the distribution of gene expression in relation to a standard anatomical model are required. In this work, we propose a new automatic method that results in the segmentation of gene expression images into distinct anatomical regions in which the expression can be quantified and compared with other images. Our method utilizes shape models from training images, texture differentiation at region boundaries, and features of anatomical landmarks, to deform a subdivision mesh-based atlas to fit gene expression images. The subdivision mesh provides a common coordinate system for internal brain data through which gene expression patterns can be compared across images. The automated large-scale annotation will help scientists interpret gene expression patterns at cellular resolution more efficiently.

Algorithms↗

Intravascular ultrasound-based imaging of vasa vasorum for the detection of vulnerable atherosclerotic plaque.

Vulnerable plaques are dangerous atherosclerotic lesions that bear a high risk of complications that can lead to heart attacks and strokes. These plaques are known to be chronically inflamed. The vasa vasorum (VV) are microvessels that nourish vessel walls. Proliferation of VV is part of the "response to injury" phenomenon in the process of plaque formation. Recent evidence has shown strong correlations between neovessel formation and macrophage infiltration in atherosclerotic plaque, suggesting VV density as a surrogate marker of plaque inflammation and vulnerability. We have developed a novel method for imaging and analyzing the density and perfusion of VV in human coronary atherosclerotic plaques using intravascular ultrasound (IVUS). Images are taken during the injection of a microbubble contrast agent and the spatiotemporal changes of the IVUS signal are monitored using enhancement-detection techniques. We present analyses of in vivo human coronary cases that, for the first time, demonstrate the feasibility of IVUS imaging of VV.

Coronary Artery Disease↗

Vasa vasorum imaging: a new window to the clinical detection of vulnerable atherosclerotic plaques.

Complications of vulnerable atherosclerotic plaques (rupture, luminal and mural thrombosis, intraplaque hemorrhage, rapid progression to stenosis, spasm, and so forth) lead to heart attacks and strokes. It remains difficult to identify what plaques are vulnerable to these complications. Despite recent developments such as thermography, spectroscopy, and magnetic resonance imaging, none of them is approved for clinical use. Intravascular ultrasound (IVUS), a relatively old yet widely available clinical tool for guiding intracoronary procedures, is increasingly used for characterization of atherosclerotic plaques. However, inability of IVUS in measuring plaque activity limits its value in detection of vulnerable plaques. In this review, we present new information suggesting that microbubble contrast-enhanced IVUS can measure activity and inflammation within atherosclerotic plaques by imaging vasa vasorum density. An increasing body of evidence indicates that vasa vasorum density may be a strong marker for plaque vulnerability. We suggest that a combination of structural assessment (cap thickness, lipid core, calcification, etc) and vasa vasorum density imaging by IVUS can serve as the most powerful clinically available tool for characterization of vulnerable plaques. Due to space limitations, all IVUS images and movies are posted on the website of the Ultimate IVUS Collaborative Project: http://www.ultimateivus.com.

Albumins↗