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Biomedical subjects

I Sugar

Publications and source records attributed to I Sugar.

3 recordsLinked to original sources

Detection and characterization of the onset of bilayer packing defects by nanosecond-resolved intramolecular excimer fluorescence spectroscopy.

Bilayer packing defects in binary dilinoleoylphosphatidylethanolamine and 1-palmitoyl-2-oleoylphosphatidylcholine (DLPE/POPC) lipid mixtures have been studied by the use of nanosecond-resolved intramolecular excimer fluorescence spectroscopy. Frequency-domain fluorescence intensity decays of dual-chain labelled dipyrenyl lipids of different chain lengths in DLPE/POPC mixtures were acquired at both the monomer (392 nm) and excimer (475 nm) emission channels and at 20 degrees C. On the basis of a new intramolecular excimer formation kinetic model, the extent of aggregation and the rotational mobility, in terms of the equilibrium constant of the monomer to aggregated state and the excimer association rate constant, respectively, of the intralipid pyrenes were calculated from the frequency-domain data. Within the range of 60-100% DLPE where bilayer defects are known to coexist with bilayer and non-bilayer states, a prominent peak in the equilibrium constant and a concomitant dip in the excimer association constant at approximately 80% DLPE were observed. Our nanosecond-resolved fluorescence results suggest that the intramolecular excimer kinetic parameters of dipyrenyl lipids are very sensitive to the onset of bilayer packing defects in lipid membranes. Moreover, the onset of bilayer defect state is characterized by the greater extent of aggregation and more hindered rotational mobility of the acyl chains as compared with the bilayer (0% DLPE) and non-bilayer inverted hexagonal (100% DLPE) states of the lipid membranes.

Kinetics↗

Constrained optimization and protein structure determination.

Energy minimization is one of the main approaches to the computational determination of macromolecular structure. Due to the approximations in the empirical free-energy functions and due to the computational difficulties in locating their global minima, the problem is at present intractable when the only information available is the sequence of subunits forming the molecule. A less-demanding problem in terms of both physics and mathematics is constrained optimization, which uses additional but incomplete experimental information such as distances between certain atoms. This paper reviews methods for generating molecular structure using bond lengths and angles as variables and shows how the structure can be fully specified in terms of local geometry. The analysis permits precise statements to be made about the minimum set of distances that specify a unique structure without recourse to energy minimization. We then discuss the complementary situation, i.e., structure prediction with energy minimization based only on sequence information. Finally, we show how distance constraints can be incorporated into energy minimization methods.

Algorithms↗

The effect of lymphostasis on bile flow and composition in the rat.

The ligation of the thoracic duct and of the hepatic lymph vessels leads in the rat to a decease of bile flow and bile salt output. Bilirublin excretion was temporarily reduced both in lymphostasis and in sham operated animals, but bilirubin concentration in the bile rose progressively and after 3 hours bilirubin output returned in both groups to the control level.

Animals↗