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Huifang Xu

Publications and source records attributed to Huifang Xu.

At least 19 recordsLinked to original sources
PubMed2006

Comparative analysis of twelve genomes of three novel group 2c and group 2d coronaviruses reveals unique group and subgroup features.

Twelve complete genomes of three novel coronaviruses-bat coronavirus HKU4 (bat-CoV HKU4), bat-CoV HKU5 (putative group 2c), and bat-CoV HKU9 (putative group 2d)-were sequenced. Comparative genome analysis showed that the various open reading frames (ORFs) of the genomes of the three coronaviruses had significantly higher amino acid identities to those of other group 2 coronaviruses than group 1 and 3 coronaviruses. Phylogenetic trees constructed using chymotrypsin-like protease, RNA-dependent RNA polymerase, helicase, spike, and nucleocapsid all showed that the group 2a and 2b and putative group 2c and 2d coronaviruses are more closely related to each other than to group 1 and 3 coronaviruses. Unique genomic features distinguishing between these four subgroups, including the number of papain-like proteases, the presence or absence of hemagglutinin esterase, small ORFs between the membrane and nucleocapsid genes and ORFs (NS7a and NS7b), bulged stem-loop and pseudoknot structures downstream of the nucleocapsid gene, transcription regulatory sequence, and ribosomal recognition signal for the envelope gene, were also observed. This is the first time that NS7a and NS7b downstream of the nucleocapsid gene has been found in a group 2 coronavirus. The high Ka/Ks ratio of NS7a and NS7b in bat-CoV HKU9 implies that these two group 2d-specific genes are under high selective pressure and hence are rapidly evolving. The four subgroups of group 2 coronaviruses probably originated from a common ancestor. Further molecular epidemiological studies on coronaviruses in the bats of other countries, as well as in other animals, and complete genome sequencing will shed more light on coronavirus diversity and their evolutionary histories.

Amino Acid Sequence↗
PubMed2006

Control of pertechnetate sorption on activated carbon by surface functional groups.

The isotope 99Tc is highly soluble and poorly adsorbed by natural materials under oxidizing conditions, thus being of particular concern for radioactive waste disposal. Activated carbon can potentially be used as an adsorbent for removing Tc from aqueous solutions. We have tested six commercial activated carbon materials for their capabilities for sorption of pertechnetate (TcO4-). The tested materials can be grouped into two distinct types: Type I materials have high sorption capabilities with the distribution coefficients (Kd) varying from 9.5 x 10(5) to 3.2 x 10(3) ml/g as the pH changes from 4.5 to 9.5, whereas type II materials have relatively low sorption capabilities with Kd remaining more or less constant (1.1 x 10(3)-1.8 x 10(3) ml/g) over a similar pH range. The difference in sorption behavior between the two types of materials is attributed to the distribution of surface functional groups. The predominant surface groups are identified as carboxylic and phenolic groups. The carboxylic group can be further divided into three subgroups, A, B, and C, in the order of increasing acidity. The high sorption capabilities of type I materials are found to be caused by the presence of a large fraction of carboxylic subgroups A and B, while the low sorption capabilities of type II materials are due to the exclusive presence of phenolic and carboxylic subgroup C. Therefore, the performance of activated carbon for removing TcO4- can be improved by enhancing the formation of carboxylic subgroups A and B during materials processing.

Journal Article↗
PubMed2006

Formation of nearly monodisperse In2O3 nanodots and oriented-attached nanoflowers: hydrolysis and alcoholysis vs pyrolysis.

Single crystalline and nearly monodisperse In2O3 nanocrystals with both dot and flower shapes were synthesized in a simple reaction system. This system used indium carboxylates as the precursors with or without alcohol as the activating reagents in a hydrocarbon solvent under elevated temperatures. Limited ligand protection (LLP) led to three-dimensional (3D) oriented attachment of nanodots, resulting in 3D nanoflowers. When the system had sufficient ligand protection for the nanocrystals, nanodots were found to be the stable products. The diameters of nearly monodisperse nanodots and nanoflowers were varied in a range from approximately 5 to approximately 15 nm and approximately 15 to approximately 60 nm, respectively. The simple reaction system made it possible to have a systematic study of the reaction mechanisms along with the growth kinetics of nanocrystals. Hydrolysis and alcoholysis were identified as the major paths for this system, as opposed to pyrolysis. Both nearly monodispersed nanodots and nanoflowers can be made through either of the reaction pathways. Hydrolysis was found as a reversible pathway, and alcoholysis was confirmed to be irreversible. Consequently, a sufficient amount of alcohol was able to force the yield of nanocrystals, both dots and flowers, to unity.

Journal Article↗
PubMed2006

Kinetics of uranium(VI) reduction by hydrogen sulfide in anoxic aqueous systems.

Aqueous U(VI) reduction by hydrogen sulfide was investigated by batch experiments and speciation modeling; product analysis by transmission electron microscopy (TEM) was also performed. The molar ratio of U(VI) reduced to sulfide consumed, and the TEM result suggested that the reaction stoichiometry could be best represented by UO2(2+) + HS- = UO2+ S* + H+. At pH 6.89 and total carbonate concentration ([CO32-]T) of 4.0 mM, the reaction took place according to the following kinetics: -d[U(VI)]/dt = 0.0103[U(VI)][S2-]T0.54 where [U(VI)] is the concentration of hexavalent uranium, and [S2-]T is the total concentration of sulfide. The kinetics of U(VI) reduction was found to be largely controlled by [CO32-]T (examined from 0.0 to 30.0 mM) and pH (examined from 6.37 to 9.06). The reduction was almost completely inhibited with the following [CO32-]T and pH combinations: [(> or = 15.0 mM, pH 6.89); (> or = 4.0 mM, pH 8.01); and (> or = 2.0 mM, pH 9.06)]. By comparing the experimental results with the calculated speciation of U(VI), it was found that there was a strong correlation between the measured initial reaction rates and the calculated total concentrations of uranium-hydroxyl species; we, therefore, concluded that uranium-hydroxyl species were the ones being reduced by sulfide, not the dominant U-carbonate species present in many carbonate-containing systems.

Adsorption↗
PubMed2006

Colloidal CdSe quantum wires by oriented attachment.

We report here a relatively low temperature (100-180 degrees C) synthetic route to high-quality and single-crystalline CdSe nanowires using air-stable and generic chemicals. The diameter of nanowires was controlled and varied in an exceptionally small size regime, between 1.5 and 6 nm. This was achieved by using alkylamines, a single type or a mixture of two different types of amines, with different chain lengths and varying the reaction temperature. The experimental results suggest the coexistence of two types of fragments in the prewire aggregates, known as "pearl-necklace" or "string-of-pearls" in the literature, which are loosely associated and chemically fused sections.

Anisotropy↗
PubMed2005

Catalysis of elemental sulfur nanoparticles on chromium(VI) reduction by sulfide under anaerobic conditions.

Chromate (CrVI) reduction by sulfide was conducted in anaerobic batch experimental systems. The molar ratio of the reduced CrVI to the oxidized S(-II) was 1:1.5 during the reaction, suggesting that the product of sulfide oxidation was elemental sulfur. Under the anaerobic condition, the reaction was pseudo first order initially with respect to CrVI, but the rate was dramatically accelerated at the later stage of the reaction. The rate acceleration was due to catalysis by elemental sulfur nanoparticles; dissolved species such as monomeric elemental sulfur and polysulfides appeared to be ineffective catalysts. Elemental sulfur nanoparticles were capable of adsorbing sulfide and such adsorbed sulfide exhibited much higher reactivity toward CrVI reduction than the aqueous-phase sulfide, resulting in the observed rate acceleration. Kinetic data under various reactant concentrations can be represented by the following empirical kinetic equation: -d[CrVI]/dt = k1 [CrVI][H2S]0.63 + k3[CrVI][triple bond S--SH]0.57. The first term on the right-hand side corresponds to the noncatalytic pathway, with k1 = 1.0 x 10(-3) (microM)(-0.63) min(-1) at pH 7.60 and 8.2 x 10(-5) (microM)-0.63 min(-1) at pH 8.10. The second term, k3[CrVI][triple bond S--SH]b, is the catalytic term with [triple bond S--SH] representing the adsorbed concentration of sulfide on the elemental sulfur nanoparticles (microM). The catalytic term is more important at the later stage of the reaction, as indicated by the observed kinetics and the enhancement of the reaction rate by externally added elemental sulfur nanoparticles. At pH 8.10, k3 = 0.0057 (microM)(-0.57) min(-1).

Adsorption↗
PubMed2005

Single-walled carbon nanotube purification, pelletization, and surfactant-assisted dispersion: a combined TEM and resonant micro-raman spectroscopy study.

Resonant Raman spectroscopy and transmission electron microscopy were used to characterize the structural changes of three single-walled carbon nanotube samples processed with purification, pelletization, and surfactant-assisted dispersion. A two-stage purification process selectively removes metallic tubes as well as small-diameter ones, enriching large-diameter semiconducting tubes. Pelletizing reduces the intertube distance but greatly increases the intensity ratio of the D band to the G band. Single-walled nanotube (SWNT) bundle size decreases during ultrasonication dispersion aided by a surfactant. SWNT bundles composed of large-diameter tubes are prone to debundling.

Carbon↗
PubMed2005

Molecular evolution analysis and geographic investigation of severe acute respiratory syndrome coronavirus-like virus in palm civets at an animal market and on farms.

Massive numbers of palm civets were culled to remove sources for the reemergence of severe acute respiratory syndrome (SARS) in Guangdong Province, China, in January 2004, following SARS coronavirus detection in market animals. The virus was identified in all 91 palm civets and 15 raccoon dogs of animal market origin sampled prior to culling, but not in 1,107 palm civets later sampled at 25 farms, spread over 12 provinces, which were claimed to be the source of traded animals. Twenty-seven novel signature variation residues (SNVs) were identified on the spike gene and were analyzed for their phylogenetic relationships, based on 17 sequences obtained from animals in our study and from other published studies. Analysis indicated that the virus in palm civets at the live-animal market had evolved to infect humans. The evolutionary starting point was a prototype group consisting of three viral sequences of animal origin. Initially, seven SNV sites caused six amino acid changes, at positions 147, 228, 240, 479, 821, and 1080 of the spike protein, to generate low-pathogenicity viruses. One of these was linked to the first SARS patient in the 2003-2004 period. A further 14 SNVs caused 11 amino acid residue changes, at positions 360, 462, 472, 480, 487, 609, 613, 665, 743, 765, and 1163. The resulting high-pathogenicity groups were responsible for infections during the so-called early-phase epidemic of 2003. Finally, the remaining six SNVs caused four amino acid changes, at positions 227, 244, 344, and 778, which resulted in the group of viruses responsible for the global epidemic.

Amino Acid Sequence↗
PubMed2005

SARS-CoV infection in a restaurant from palm civet.

Epidemiologic investigations showed that 2 of 4 patients with severe acute respiratory syndrome (SARS) identified in the winter of 2003-2004 were a waitresss at a restaurant in Guangzhou, China, that served palm civets as food and a customer who ate in the restaurant ashort distance from animal cages. All 6 palm civets at the restaurant were positive for SARS-associated coronavirus (SARS-CoV). Partial spike (S) gene sequences of SARS-CoV from the 2 patients were identical to 4 of 5 Sgene viral sequences from palm civets. Phylogenetic analysis showed that SARS-CoV from palm civets in the restaurant was most closely related to animal isolates. SARS cases at the restaurant were the result of recent interspecies transfer from the putative palm civet reservoir, and not the result of continued circulation of SARS-CoV in the human population.

Adult↗
PubMed2004

Self-assembly of ordered, robust, three-dimensional gold nanocrystal/silica arrays.

We report the synthesis of a new nanocrystal (NC) mesophase through self-assembly of water-soluble NC micelles with soluble silica. The mesophase comprises gold nanocrystals arranged within a silica matrix in a face-centered cubic lattice with cell dimensions that are adjustable through control of the nanocrystal diameter and/or the alkane chain lengths of the primary alkanethiol stabilizing ligands or the surrounding secondary surfactants. Under kinetically controlled silica polymerization conditions, evaporation drives self-assembly of NC micelles into ordered NC/silica thin-film mesophases during spin coating. The intermediate NC micelles are water soluble and of interest for biolabeling. Initial experiments on a metal-insulator-metal capacitor fabricated with an ordered three-dimensional gold nanocrystal/silica array as the "insulator" demonstrated collective Coulomb blockade behavior below 100 kelvin and established the current-voltage scaling relationship for a well-defined three-dimensional array of Coulomb islands.

Journal Article↗
PubMed2004

Hydrothermal synthesis of prismatic NaHoF(4) microtubes and NaSmF(4) nanotubes.

A new example of tubular materials based on sodium rare-earth tetrafluorides, NaHoF(4) and NaSmF(4), has been fabricated by a simple hydrothermal method. In addition, an unusual nanotube with a perfect couple of an outer prismatic shell with an inner concentric prismatic nanorod at the center is found. According to the architectures of various products, the general growth mechanism of these tubes is proposed.

Journal Article↗
PubMed2004

Investigation of pyrochlore-based U-bearing ceramic nuclear waste: uranium leaching test and TEM observation.

A durable titanate ceramic waste form (Synroc) with pyrochlore (Ca(U,Pu)Ti2O7) and zirconolite (CaZrTi2O7) as major crystalline phases has been considered to be a candidate for immobilizing various high-level wastes containing fissile elements (239Pu and 235U). Transmission electron microscopy study of a sintered ceramic with stoichiometry of Ca(U(0.5)Ce(0.25)Hf(0.25))Ti2O7 shows the material contains both pyrochlore and zirconolite phases and structural intergrowth of zirconolite lamellae within pyrochlore. The (001) plane of zirconolite is parallel to the (111) plane of pyrochlore because of their structural similarities. The pyrochlore is relatively rich in U, Ce, and Ca with respect to the coexisting zirconolite. Average compositions for the coexisting pyrochlore and zirconolite at 1350 degrees C are Ca(1.01)(Ce3+(0.13)Ce4+(0.19)U(0.52)Hf(0.18))(Ti(1.95)Hf(0.05))O7 (with U/(U + Hf) = 0.72) and (Ca(0.91)Ce(0.09))(Ce3+(0.08)U(0.26)Hf(0.66)Ti(0.01))Ti(2.00)O7 (with U/(U + Hf) = 0.28), respectively. A single pyrochlore (Ca(U,Hf)Ti2O7) phase may be synthesized at 1350 degrees C if the ratio of U/(U + Hf) is greater than 0.72, and a single zirconolite (Ca(Hf,U)Ti2O7) phase may be synthesized at 1350 degrees C if the ratio of U/(U + Hf) is less than 0.28. The synthesized products were used for dissolution tests. The single-pass flow-through dissolution tests show that the dissolution of the U-bearing pyrochlore is incongruent. All the elements are released at differing rates. The dissolution data also show a decrease in rate with run time. The results indicate that a diffusion-controlled process may play a key role during the release of U. TEM observation of the leached pyrochlore directly proves that an amorphous leached layer that is rich in Ti and Hf formed on the surface after the ceramic was leached in pH 4 buffered solution for 835 days. The thickness of the layer ranges from 6 to 10 nm. A nanocrystalline TiO2 phase also forms in the leached layer. The U leaching rate (g/(m2 day)) in acidic solutions can be expressed as log(NR) = -5.36-0.20 pH, where NR is the normalized rate. Conservative leaching rates of uranium [log(NR)] for the U-bearing ceramic at pH 2 and pH 4 solutions are -5.76 and -6.16 g/(m2 day), respectively. The results show that the U release rate of the ceramic waste is 10 times slower than that of defense high-level waste glass and about 1000 times slower than that of spent fuel. The pyrochlore-based ceramic is an ideal waste form for immobilizing long-lived radionuclides of 239Pu and 235U due to the Ti- and Hf-rich leached layer that forms on the ceramic surface. The leached layer functions as a protective layer and therefore reduces the leaching rate as thickness of the leached layer increases.

Ceramics↗
PubMed2004

Controlled synthesis of 2-D and 3-D dendritic platinum nanostructures.

Seeding and autocatalytic reduction of platinum salts in aqueous surfactant solution using ascorbic acid as the reductant leads to remarkable dendritic metal nanostructures. In micellar surfactant solutions, spherical dendritic metal nanostructures are obtained, and the smallest of these nanodendrites resemble assemblies of joined nanoparticles and the nanodendrites are single crystals. With liposomes as the template, dendritic platinum sheets in the form of thin circular disks or solid foamlike nanomaterials can be made. Synthetic control over the morphology of these nanodendrites, nanosheets, and nanostructured foams is realized by using a tin-porphyrin photocatalyst to conveniently and effectively produce a large initial population of catalytic growth centers. The concentration of seed particles determines the ultimate average size and uniformity of these novel two- and three-dimensional platinum nanostructures.

Journal Article↗
PubMed2003

Complex and oriented ZnO nanostructures.

Extended and oriented nanostructures are desirable for many applications, but direct fabrication of complex nanostructures with controlled crystalline morphology, orientation and surface architectures remains a significant challenge. Here we report a low-temperature, environmentally benign, solution-based approach for the preparation of complex and oriented ZnO nanostructures, and the systematic modification of their crystal morphology. Using controlled seeded growth and citrate anions that selectively adsorb on ZnO basal planes as the structure-directing agent, we prepared large arrays of oriented ZnO nanorods with controlled aspect ratios, complex film morphologies made of oriented nanocolumns and nanoplates (remarkably similar to biomineral structures in red abalone shells) and complex bilayers showing in situ column-to-rod morphological transitions. The advantages of some of these ZnO structures for photocatalytic decompositions of volatile organic compounds were demonstrated. The novel ZnO nanostructures are expected to have great potential for sensing, catalysis, optical emission, piezoelectric transduction, and actuations.

Anisotropy↗
PubMed2003

Large oriented arrays and continuous films of TiO(2)-based nanotubes.

We report for the first time a one-step, templateless method to directly prepare large arrays of oriented TiO2-based nanotubes and continuous films. These titania nanostructures can also be easily prepared as conformal coatings on a substrate. The nanostructured films were formed on a Ti substrate seeded with TiO2 nanoparticles. SEM and TEM results suggested that a folding mechanism of sheetlike structures was involved in the formation of the nanotubes. The oriented arrays of TiO2 nanotubes, continuous films, and coatings are expected to have potentials for applications in catalysis, filtration, sensing, photovoltaic cells, and high surface area electrodes.

Journal Article↗
PubMed2003

Kinetically controlled synthesis of wurtzite ZnS nanorods through mild thermolysis of a covalent organic-inorganic network.

The high-temperature (over 1020 degrees C) polymorph of ZnS, wurtzite ZnS, has been successfully prepared through a low-temperature (180 degrees C) hydrothermal synthesis route in the presence of ethylenediamine (en). The effects of en concentrations, reactant concentrations, reaction temperatures, and reaction times on crystal structures and shapes of ZnS have been investigated. We have demonstrated that the wurtzite ZnS showing rodlike morphology can be kinetically stabilized in the presence of en, especially at a high reactant concentration under appropriate hydrothermal conditions. Besides phase evolution of ZnS from hexagonal to cubic, morphological transformation from nanorods to nanograins has also been observed in the present investigation. Nanograins of phase-pure cubic ZnS, the thermodynamically stable polymorph, are easily prepared, and no hexagonal ZnS nanorods are detected in "pure" water, i.e., in the absence of en molecules. The above investigations indicate that the controlled fabrication of wurtzite ZnS nanorods is due to a mediated generation of the lamellar phase, ZnS.0.5en, a covalent organic-inorganic network based on ZnS slabs, and to its subsequent thermolysis in aqueous solution. The controlled growth of wurtzite ZnS nanorods and sphalerite ZnS nanograins provides us an opportunity to structurally modulate physical properties. These wurtzite ZnS nanorods display narrower and stronger blue emission than sphalerite ZnS nanograins.

Journal Article↗