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Biomedical subjects

H J Butt

Publications and source records attributed to H J Butt.

9 recordsLinked to original sources
PubMed2005

Surface forces in a confined polymer melt: self-consistent field analysis of full and restricted equilibrium cases.

In full equilibrium the self-consistent field theory for a homopolymer melt confined between two surfaces predicts pronounced oscillatory interaction forces on the monomer length scale. However, when not all the polymer molecules can reversibly equilibrate with the bulk, the trapped molecules may be squeezed, adding a repulsive contribution to the interaction energy. The classical constrained or restricted equilibrium approach by Scheutjens and Fleer two decades ago to deal with this for polymers adsorbed from dilute solutions, breaks down in semidilute and concentrated polymer solutions. We present a generalized restricted equilibrium ansatz applicable also for concentrated polymer solutions. The key idea is that only the adsorbed polymer molecules, i.e., molecules that touch the surface at least once, are forced to remain inside the gap, whereas the nonadsorbing chains are free to move out of the gap when the surfaces approach each other. As in dilute solutions, the forces found in confined melt with trapped adsorbed chains become repulsive. We analyse the dependence of the interaction forces both in full as well as in restricted equilibrium cases as a function of the chain length and the interactions with the surface for a compressible polymer melt.

Journal Article↗
PubMed1999

Force measurements on myelin basic protein adsorbed to mica and lipid bilayer surfaces done with the atomic force microscope.

The mechanical and adhesion properties of myelin basic protein (MBP) are important for its function, namely the compaction of the myelin sheath. To get more information about these properties we used atomic force microscopy to study tip-sample interaction of mica and mixed dioleoylphosphatidylserine (DOPS) (20%)/egg phosphatidylcholine (EPC) (80%) lipid bilayer surfaces in the absence and presence of bovine MBP. On mica or DOPS/EPC bilayers a short-range repulsive force (decay length 1.0-1.3 nm) was observed during the approach. The presence of MBP always led to an attractive force between tip and sample. When retracting the tip again, force curves on mica and on lipid layers were different. While attached to the mica surface, the MBP molecules exhibited elastic stretching behavior that agreed with the worm-like chain model, yielding a persistence length of 0.5 +/- 0.25 nm and an average contour length of 53 +/- 19 nm. MBP attached to a lipid bilayer did not show elastic stretching behavior. This shows that the protein adopts a different conformation when in contact with lipids. The lipid bilayer is strongly modified by MBP attachment, indicating formation of MBP-lipid complexes and possibly disruption of the original bilayer structure.

Adsorption↗
PubMed1996

STM of metal embedded and coated DNA and DNA-protein complexes.

Bare and Pt/Ir/C-coated DNA has been analysed using scanning tunnelling microscopy (STM). To achieve reproducible imaging of bare DNA on mica ethanol/air-dried molecules were embedded in Pt/C. By peeling the metal film off the mica, the previously mica-exposed side of the Pt/C-film with the embedded DNA molecules was accessible for STM analysis. By applying this replica/anchoring technique only hollow trenches in the metal film, and not the DNA itself, could be visualized. The gaps averaged 3.1 nm (+/- 0.9 nm) wide and 1 nm (+/- 0.5 nm) deep. Using scanning force microscopy it could be confirmed that the DNA remained in the Pt/C film during the peel-off procedure. For STM, DNA fragments were also coated with 0.7-1 nm Pt/Ir/C. Owing to the high Z-resolution the STM samples were coated at a high elevation angle (65 degrees), thereby minimizing the problem of self-shadowing. Coating by Pt/Ir/C allowed routine imaging and quantitative analysis of both ethanol/air- and freeze-dried DNA under atmospheric conditions. After ethanol/air drying measured values for DNA width and height were 5.1 nm (+/- 1.8 nm) and 0.9 nm (+/- 0.2 nm), respectively. Freeze-dried DNA averaged 4.2 nm (+/- 1.3 nm) wide and 1.1 nm (+/- 0.1 nm) high. A Pt/Ir/C-coating was also applied to visualize DNA-protein interaction using STM.

Aluminum Silicates↗
PubMed1990

Imaging the membrane protein bacteriorhodopsin with the atomic force microscope.

The membrane protein bacteriorhodopsin was imaged in buffer solution at room temperature with the atomic force microscope. Three different substrates were used: mica, silanized glass and lipid bilayers. Single bacteriorhodopsin molecules could be imaged in purple membranes adsorbed to mica. A depression was observed between the bacteriorhodopsin molecules. The two dimensional Fourier transform showed the hexagonal lattice with a lattice constant of 6.21 +/- 0.20 nm which is in agreement with results of electron diffraction experiments. Spots at a resolution of approximately 1.1 nm could be resolved. A protein, cationic ferritin, could be imaged bound to the purple membranes on glass which was silanized with aminopropyltriethoxysilane. This opens the possibility of studying receptor/ligand binding under native conditions. In addition, purple membranes bound to a lipid bilayer were imaged. These images may help in interpreting results of functional studies done with purple membranes adsorbed to black lipid membranes.

Adsorption↗
PubMed1989

Aspartic acids 96 and 85 play a central role in the function of bacteriorhodopsin as a proton pump.

A spectroscopic and functional analysis of two point-mutated bacteriorhodopsins (BRs) from phototrophic negative halobacterial strains is reported. Bacteriorhodopsin from strain 384 contains a glutamic acid instead of an aspartic acid at position 85 and BR from strain 326 contains asparagine instead of aspartic acid at position 96. Compared to wild-type BR, the M formation in BR Asp85---Glu is accwelerated approximately 10-fold, whereas the M decay in BR Asp96---Asn is slowed down approximately 50-fold at pH6. Purple membrane sheets containing the mutated BRs were oriented and immobilized in polyacrylamide gels or adsorbed to planar lipid films. The measured kinetics of the photocurrents under various conditions agree with the observed photocycle kinetics. The ineffectivity of BR Asp85---Glu resides in the dominance of an inactive species absorbing maximally at approximately 610 nm, while BR Asp96---Asn is ineffective due to its slow photocycle. These experimental results suggest that aspartic acid 96 plays a crucial role for the reprotonation of the Schiff base. Both residues are essential for an effective proton pump.

Amino Acid Sequence↗
PubMed1989

A defective proton pump, point-mutated bacteriorhodopsin Asp96----Asn is fully reactivated by azide.

Addition of azide fully restored the proton pump activity of defective bacteriorhodopsin (BR) mutant protein Asp96----Asn. The decay time of M of BR Asp96----Asn, the longest living intermediate, was decreased from 500 ms at pH 7.0 to approximately 1 ms under conditions of saturating azide concentrations. This decay was faster than the decay of M in the wild-type, where no such azide effect was detectable. Stationary photocurrents, measured with purple membranes immobilized and oriented in a polyacrylamide gel, increased upon addition of azide up to the level of the wild-type. Different small anions of weak acids restored the pump activity with decreasing affinity in the order: cyanate greater than azide greater than nitrite greater than formiate greater than acetate. The activation energy of the M decay in the mutant was higher in the presence (48 kJ/mol) than in the absence (27 kJ/mol) of 100 mM azide even though the absolute rate was dramatically increased by azide. This effect of azide is due to the substitution of a carboxamido group for a carboxylic group at position 96 which removes the internal proton donor and causes an increase in the entropy change of activation for proton transfer which is reversed by azide.

Anions↗
PubMedDate not supplied

Imaging cells with the atomic force microscope.

Different types of cells have been imaged with the atomic force microscope. The morphology of the archaebacterium Halobacterium halobium in its dry state was revealed. On a leaf of the small Indian tree Lagerstroemia subcostata a stoma was imaged. The lower side of a water lily leaf was imaged in water showing features down to 12 nm. Finally, fixed red and white blood cells were imaged in buffer showing features down to 8 nm. The images demonstrate that atomic force microscopy can provide high-resolution images of cell surfaces under physiological conditions.

Animals↗