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Biomedical subjects

Günter Gauglitz

Publications and source records attributed to Günter Gauglitz.

At least 19 recordsLinked to original sources
PubMed2005

Label-free characterisation of oligonucleotide hybridisation using reflectometric interference spectroscopy.

The potential of a label-free detection method, reflectometric interference spectroscopy (RIfS), for temperature-dependent DNA hybridisation experiments (for example in single nucleotide polymorphism (SNP) analysis) is investigated. Hybridisations of DNA, peptide nucleic acid (PNA), and locked nucleic acid (LNA) to a single stranded DNA were measured for several temperatures, and the melting curves and temperatures were calculated from the changes in optical thickness obtained. These measurements were performed by hybridising surface-immobilised single stranded oligomers with their complementary ssDNA or with ssDNA containing SNPs at different temperatures. DNA was compared to its analogue oligomers PNA and LNA due to their stability against nuclease. A comparison of melting temperatures demonstrated the higher binding affinities of the DNA analogues. Moreover, a continuous melting curve was obtained by first hybridising the functionalised surface with its complementary DNA at room temperature and then heating up in-flow. Measurement of the continuous melting curve was only possible due to the insensitivity of the RIfS method towards temperature changes. This is an advantage over other label-free detection methods, which are based on determining the refractive index.

Base Sequence↗
PubMed2005

Reflectometric interference spectroscopy combined with MALDI-TOF mass spectrometry to determine quantitative and qualitative binding of mixtures of vancomycin derivatives.

This paper describes the combination of matrix-assisted laser desorption/ionization time-of-flight mass spectrometry with label free bio-interaction analysis based on reflectometric interference spectroscopy (RIfS). The potential of this concerted approach is demonstrated by measuring the binding properties of different vancomycin-type glycopeptide antibiotic mixtures. Although RIfS is sensitive and does not require use of a label, it cannot determine which components of a mixture have bound to the surface after incubation. Fortunately, each bound species has a unique mass that can, afterwards, be determined by mass spectrometry. Thus, the screening capability of RIfS is combined with the identification capability of mass spectrometry.

Anti-Bacterial Agents↗
PubMed2004

A miniaturized heterogeneous fluorescence immunoassay on gold-coated nano-titer plates.

A miniaturized heterogeneous fluorescence immunoassay utilizing radiationless energy transfer to gold surfaces for fluorescence quenching is described. The phase-separation fluorescence immunoassay (PSFIA), a competitive heterogeneous assay, is carried out in the nanowells of a gold-coated nano-titer plate (NTP). Small analytes such as atrazine and histamine can be detected in nanoliter volumes with low limits of detection, maintaining a high degree of parallelization and miniaturization. The assay is characterized and optimized with respect to gold-layer thickness, surface concentration of immobilized analyte derivative, and antibody concentration. Various immobilization strategies are discussed.

Fluorescence Resonance Energy Transfer↗
PubMed2004

Different approaches to multivariate calibration of nonlinear sensor data.

In this study, different approaches to the multivariate calibration of the vapors of two refrigerants are reported. As the relationships between the time-resolved sensor signals and the concentrations of the analytes are nonlinear, the widely used partial least-squares regression (PLS) fails. Therefore, different methods are used, which are known to be able to deal with nonlinearities present in data. First, the Box-Cox transformation, which transforms the dependent variables nonlinearly, was applied. The second approach, the implicit nonlinear PLS regression, tries to account for nonlinearities by introducing squared terms of the independent variables to the original independent variables. The third approach, quadratic PLS (QPLS), uses a nonlinear quadratic inner relationship for the model instead of a linear relationship such as PLS. Tree algorithms are also used, which split a nonlinear problem into smaller subproblems, which are modeled using linear methods or discrete values. Finally, neural networks are applied, which are able to model any relationship. Different special implementations, like genetic algorithms with neural networks and growing neural networks, are also used to prevent an overfitting. Among the fast and simpler algorithms, QPLS shows good results. Different implementations of neural networks show excellent results. Among the different implementations, the most sophisticated and computing-intensive algorithms (growing neural networks) show the best results. Thus, the optimal method for the data set presented is a compromise between quality of calibration and complexity of the algorithm.

Journal Article↗
PubMed2004

Investigation of initial pellicle formation on modified titanium dioxide (TiO2) surfaces by reflectometric interference spectroscopy (RIfS) in a model system.

OBJECTIVES: Plaque accumulation, leading to inflammatory processes and bone loss, is one of the main reasons for failure of dental implants. Pellicle formation plays a key role in bacterial adhesion and plaque accumulation. The influence of experimental bioactive implant surface coatings on the initial process of pellicle formation was investigated in a model system. METHODS: TiO2-films were modified by covalent binding of laminin and human epidermal growth factor (EGF) to promote adhesion of epithelial cells. Adsorption and dissociation behavior of bovine serum albumin (BSA) and salivary proteins on these surfaces were monitored by time-resolved reflectometric interference spectroscopy (RIfS). RESULTS: The thickness of the irreversibly adsorbed salivary protein layer was reduced from 2.78 +/- 0.71 nm on unmodified TiO2 to 0.78 +/- 0.22 nm on laminin-coated surfaces and to 1.18 +/- 0.29 nm on EGF-coated surfaces. The percentage of initially adsorbed proteins remaining irreversibly bound was reduced from 51 +/- 8% on titanium to 23 +/- 5% by laminin coating and to 44 +/- 11% on EGF-coated surfaces. The highest reduction of protein adsorption (layer thickness lower than 0.05 nm) was achieved on DC-PEG-layers used as spacer for protein coupling. SIGNIFICANCE: Laminin and EGF were shown to be promising candidates for use as biological coatings on the transmucosal part of titanium dental implants where the objective is to enhance epithelial adhesion and inhibit adsorption of salivary proteins and bacteria.

Animals↗
PubMed2003

Multi-analyte assay for triazines using cross-reactive antibodies and neural networks.

A biosensor system based on total internal reflectance fluorescence (TIRF) was used to discriminate a mixture of the triazines atrazine and simazine. Only cross-reactive antibodies were available for these two analytes. The biosensor is fully automated and can be regenerated allowing several hundreds of measurements without any user input. Even a remote control for online monitoring in the field is possible. The multivariate calibration of the sensor signal was performed using artificial neural networks, as the relationship between the sensor signals and the concentration of the analytes is highly non-linear. For the development of a multi-analyte immunoassay consisting of two polyclonal antibodies with cross-reactivity to atrazine and simazine and different derivatives immobilised on the transducer surface, the binding characteristics between these substances like binding capacity and cross-reactivity were characterised. The examination of three different measurement procedures showed that a two-step measurement using only one antibody per step allows a quantification of both analytes in a mixture with limits of detection of 0.2 microg/l for atrazine and 0.3 microg/l for simazine. The biosensor is suitable for online monitoring in the field and remote control is possible.

Algorithms↗
PubMed2003

Amidine-based molecularly imprinted polymers-new sensitive elements for chiral chemosensors.

Using the optical measurement technique reflectometric interference spectroscopy (RIfS), the interaction of molecularly imprinted polymers (imprinted with either (R, R)- or (S, S)-2,3-di- O-benzoyltartraric acid) with the corresponding templates and template antipodes were investigated. With these sensors chiral separation with a separation factor of 1.2 could be achieved whereas a reference polymer resulted in no separation. RIfS signals were of opposite sign for imprinted polymer layers containing phenylboronic acid binding site monomers.

Journal Article↗
PubMed2003

Electrosurface phenomena at polymer films for biosensor applications.

Electrosurface phenomena at thin polymer films utilized in the preparation of biosensors have been studied by use of the Microslit Electrokinetic set-up. For the investigated polymer layers (aminodextran, carboxylated dextran, diaminopoly(ethylene glycol), dicarboxypoly(ethylene glycol), biotinylated poly(ethylene glycol), and streptavidin on biotinylated poly(ethylene glycol), the charge formation in aqueous electrolyte solutions was found to depend on the pH value, that is, OH- and H3O+ are the charge determining ions. The isoelectric points obtained from zeta potential versus pH plots could be utilized to draw conclusions on the introduction of acidic or basic groups and on the degree of molecular surface coverage, respectively. The hydrodynamically mobile charge reflected by the magnitude of the zeta potential contributed to only about 6% or less of the total surface conductivity of the polymer layers. The experimental determination of the total surface conductivity was found to provide valuable information on structural features of biosensor interfaces in aqueous environments.

Biosensing Techniques↗
PubMed2003

Urinary nucleosides as potential tumor markers evaluated by learning vector quantization.

Modified nucleosides were recently presented as potential tumor markers for breast cancer. The patterns of the levels of urinary nucleosides are different for tumor bearing individuals and for healthy individuals. Thus, a powerful pattern recognition method is needed. Although backpropagation (BP) neural networks are becoming increasingly common in medical literature for pattern recognition, it has been shown that often-superior methods exist like learning vector quantization (LVQ) and support vector machines (SVM). The aim of this feasibility study is to get an indication of the performance of urinary nucleoside levels evaluated by LVQ in contrast to the evaluation the popular BP and SVM networks. Urine samples were collected from female breast cancer patients and from healthy females. Twelve different ribonucleosides were isolated and quantified by a high performance liquid chromatography (HPLC) procedure. LVQ, SVM and BP networks were trained and the performance was evaluated by the classification of the test sets into the categories "cancer" and "healthy". All methods showed a good classification with a sensitivity ranging from 58.8 to 70.6% at a specificity of 88.4-94.2% for the test patterns. Although the classification performance of all methods is comparable, the LVQ implementations are superior in terms of more qualitative features: the results of LVQ networks are more reproducible, as the initialization is deterministic. The LVQ networks can be trained by unbalanced sizes of the different classes. LVQ networks are fast during training, need only few parameters adjusted for training and can be retrained by patterns of "local individuals". As at least some of these features play an important role in an implementation into a medical decision support system, it is recommended to use LVQ for an extended study.

Adult↗
PubMed2003

New and versatile optical-immunoassay instrumentation for water monitoring.

This article is a review of new and versatile optical-immunoassay instrumentation for water monitoring developed through two European Union projects, RIver ANAlyser (RIANA) and Automated Water Analyser Computer Supported System (AWACSS). Both projects utilise immunoassay techniques to isolate the analytes and Total Internal Reflection Fluorescence (TIRF) to quantify them. Completed in 1999, the RIANA project developed a sensitive and cost-effective analytical system capable of simultaneous detection of multiple-analytes in real-world water samples. The AWACSS project has been in progress since 2001 and is developing rugged-but-sensitive instrumentation that will detect up to 30 analytes simultaneously, will operate unattended, and will have networking capability.

Biosensing Techniques↗
PubMed2002

Discrimination of methanol and ethanol vapors by the use of a single optical sensor with a microporous sensitive layer.

The sorption of methanol and ethanol vapors by a microporous glassy polycarbonate is studied. The increase of the refractive index of the polymer during analyte sorption is measured by surface plasmon resonance. Both analytes are sorbed into the micropores of the polymer showing different diffusion kinetics. The sensor response during analyte exposure is subdivided into different time channels. By evaluating this additional data dimension by neural networks, a simultaneous multicomponent analysis of binary mixtures of ethanol and methanol vapors is possible using the sensor response of only one single sensor. A feature extraction results in an interpretable model and an improved prediction with errors of 2.0% for methanol and 2.4% for ethanol.

Journal Article↗
PubMed2002

Suitability of hyperbranched polyester for sensoric applications--investigation with reflectometric interference spectroscopy.

Hyperbranched polyesters (HBP) with different end groups (P-OH, P-COOH, P-OAc) were prepared as thin films. Their surface properties were investigated using zeta potential and contact angle measurements. The differences in surface properties between P-OH and P-COOH, on the one hand, and P-OAc, on the other hand, predicted different behavior in sensoric applications. Therefore, the vapor of the homologous series of alcohols from methanol to pentanol was exposed to the thin films. Changes in thickness were observed with reflectometric interference spectroscopy (RIfS). First investigations in a current analytical problem for the detection and discrimination of refrigerants (freons) using P-OH as sensitive layer have been shown. Polydimethylsiloxane (PDMS) and poly(ether urethane) (PUT) were used as reference sensor materials for the RIfS measurements.

Journal Article↗
PubMed2002

Use of a modified cyclodextrin host for the enantioselective detection of a halogenated diether as chiral guest via optical and electrical transducers.

In an alkaline rebreathing circuit, the inhalation anesthetic sevoflurane degrades into at least two products, one of them being the chiral halodiether 1,1,1,3,3-pentafluoro-2-(fluoromethoxy)-3-methoxypropane (halodiether B). Using octakis(3-O-butanoyl-2,6-di-O-n-pentyl)-y-cyclodextrin (Lipodex E) as chiral host diluted in the polysiloxane PS255, an exceptional large chiral separation factor alpha of 9.7 at 30 degrees C was found for halodiether B by capillary gas chromatography (cGC). Hence, the interaction of the single enantiomers and the racemic mixture of the halodiether B with Lipodex E was selected as a model system to study the enantioselective recognition by thickness shear mode resonators (TSMR), surface acoustic wave sensors, surface plasmon resonance (SPR), and reflectometric interference spectroscopy. Further investigations of the recognition process by using chemical sensors confirmed the preferential enrichment of the S-enantiomer resulting in 9-fold higher signals. Based on the distinction between enantioselective and nonenantioselective sorption, thermodynamic complexation constants of the single enantiomers with Lipodex E could be determined. The difference in Gibbs free energy -deltaE2,E1(deltaG) of the complexation of the enantiomers of halodiether B with pure Lipodex E was determined at 30 degrees C by TSMR and SPR to be 5.7 or 5.9 kJ/mol, respectively, agreeing well with that determined by cGC, i.e., 5.7 kJ/mol at 30 degrees C.

Journal Article↗
PubMed2002

Label-free parallel screening of combinatorial triazine libraries using reflectometric interference spectroscopy.

The parallel reflectometric interference spectroscopy is presented as a label-free optical detection method. A new setup was adapted to accommodate sample carriers in a 96-well microplate. It allows for the first time simultaneous plate imaging by a CCD camera for the parallel detection of specific biomolecular interaction in the microplate wells at heterogeneous phase using direct optical monitoring. The detection of binding events with time resolution enables a highly parallel functional biomolecular interaction analysis (BIA). The combination of this new screening setup with combinatorial solid-phase synthesis is performed in the wells of glass-bottom microplates to accomplish the synthesis and the screening platform within one device. As a model system for a solid-phase substance library, synthesis of a triazine library and the subsequent BIA with four different antibodies were carried out. The presented setup enables a time resolution of 18 s with a total screening time of less than 35 min including baseline adjustment, BIA, and regeneration of the screening device for 96 samples in parallel. The binding studies reveal a fast classification of the different monoclonal and polyclonal antibodies and enable the detection of triazines with high binding affinity. The presented prototype is the first parallelized optical label-free detection system for biomolecular interaction analysis that is suitable for a high-throughput screening based on the 96-well microplate format.

Antibodies↗
PubMed2002

Online monitoring of solid-phase peptide syntheses on glass-type surfaces using white light interference.

Label-free optical detection methods are of particular value for the investigation of biomolecular interactions. A label-free method based on reflectometric interference spectroscopy is described which enables both the on-line monitoring of solid phase peptide syntheses and subsequently the determination of antibody binding to these peptides without cleavage from the support. The method uses SiO(2) transducers that were modified with diaminopolyethylene glycol. The stepwise coupling of different amino acids to the transducer surface was investigated and the complete monitoring of the synthesis of a viral epitope was performed. The success of the synthesis was proven via binding of a specific monoclonal antibody to the transducer-bound product. In order to demonstrate specificity the binding was inhibited with the same peptide epitope added in solution. The approach is attractive especially in the field of high throughput screening since both the synthesis and the interaction with the biological receptor can be monitored using the same technique.

Amino Acids↗
PubMed2001

Characterisation of antibodies and analytes by surface plasmon resonance for the optimisation of a competitive immunoassay based on energy transfer.

The determination of binding constants using surface plasmon resonance (SPR) was introduced to optimise a competitive homogeneous fluorescence energy-transfer immunoassay (ETIA) before labelling. Steroids were chosen as model for the detection of three analytes estrone, estradiol and ethinylestradiol--by taking three polyclonal antibodies (anti estrone-, anti estradiol- and anti estrogen-antibodies) and the corresponding analyte derivatives used for the immunisation. The active concentration of the antibodies was determined before and after labelling. Inhibition curves were recorded using SPR for all possible combinations of analyte, antibody, and analyte derivatives. The experiments revealed that the active antibody concentration can be reduced to 30% whereas the antibody affinity is not affected by the labelling process. Limits of the use of SPR for determination of affinity constants in solution are discussed. All possible ETIA calibration for the quantification of estrone and estradiol was performed. The lower limits of detection for estrone (0.06 microg L(-1)) and estradiol (0.17 microg L(-1)) were reached with the anti-estrogen IgG and its derivative

Animals↗