Search PubMedSearch

Biomedical subjects

G T Herman

Publications and source records attributed to G T Herman.

14 recordsLinked to original sources

Fully three-dimensional reconstruction from data collected on concentric cubes in Fourier space: implementation and a sample application to MRI.

An algorithm is proposed for rapid and accurate reconstruction from data collected in Fourier space at points arranged on a grid of concentric cubes. The Fourier transform of the object to be reconstructed is decomposed into the sum of three functions by subdividing its domain into three non-overlapping mutually orthogonal double pyramids. Each of the three functions is zero-valued outside one of the double pyramids and has values inside that double pyramid which are the same as those of Fourier transform of the object to be reconstructed at the same points. Inverse Fourier transforms of these individual functions can be calculated using the chirp z-transform. The outputs of these inverse transforms for the three functions are estimates of their values at points of the same rectangular grid. The function to be reconstructed is estimated for this grid by adding together the three inverse transforms. The whole process has computational complexity of the same order as required for the 3D fast Fourier transform and so (for medically relevant sizes of the data set) it is faster than backprojection into the same size rectangular grid. The design of the algorithm ensures that no interpolations are needed, in contrast to methods involving backprojection with their unavoidable interpolations. As an application, a 3D data collection method for MRI has been designed which directly samples the Fourier transform of the object to be reconstructed on concentric cubes as needed for the algorithm.

Algorithms

Analysis of brain and cerebrospinal fluid volumes with MR imaging. Part I. Methods, reliability, and validation.

A computerized system was developed to process standard spin-echo magnetic resonance (MR) imaging data for estimation of brain parenchyma and cerebrospinal fluid (CSF) volumes. In phantom experiments, the estimated volumes corresponded closely to the true volumes (r = .998), with a mean error less than 1.0 cm3 (for phantom volumes ranging from 5 to 35 cm3), with excellent intra- and interobserver reliability. In a clinical validation study with actual brain images of 10 human subjects, the average coefficient of variation between observers for the measurement of absolute brain and CSF volumes was 1.2% and 6.4%, respectively. The intraclass correlations for three expert operators is greater than .99 in the measurement of brain and ventricular volumes and greater than .94 for total CSF volume. Therefore, the authors believe that their technique to analyze MR images of the brain performed with acceptable levels of accuracy and reliability and that it can be used to measure brain and CSF volumes for clinical research. This technique could be helpful in the correlation of neuroanatomic measurements to behavioral and physiologic parameters in neuropsychiatric disorders.

Algorithms

Correction for beam hardening in computed tomography.

We investigate how one can estimate from the total attenuation, p, of a polyenergetic X-ray beam what the total attenuation, m, of a monoenergetic beam would have been along the same ray. We find that for beams with typical diagnostic X-ray spectra passing through the human body one can find a simple function f such that f(p) is a sufficiently close estimate of m to allow good reconstructions. We also find that m cannot be accurately estimated from p based on the assumption that the human body consists of water alone. Our results are demonstrated by reconstructions of a mathematical model of a cross-section of the human thorax. This article is self-contained and includes in its Appendices a detailed discussion of the mathematical nature of the problem of bean hardening in computed tomography.

Humans

Data collection for cross-sectional image reconstruction by a moving ring of positron annihilation detectors.

A ring of positron annihilation detectors capable of two independent motions in the plane of the ring is considered. It can rotate around its center, and the whole ring may move so that its center traces a circular path. Provided certain parameters are chosen according to given formulas, data collected by such a detector ring can be reorganized (rebinned), in a computationally very inexpensive fashion, so that the data items in each bin are measurements along parallel lines spaced at small equal intervals. Efficient high resolution reconstruction algorithms that assume such data organization can therefore be applied to data collected collected by a moving positron ring detector. The method is demonstrated on a realistic example.

Computers

Display of three-dimensional information in computed tomography.

From a sequence of computed tomograms of two-dimensional transverse slices of a body one can build up a three-dimensional array of numbers containing spatial rather than cross-sectional information. We have developed computer methods to display a slice at arbitrary orientation through the three-dimensional object. The three-dimensional array of numbers can also be used to display what any particular organ would look like if it were removed from the body. This is done by a computer technique that first detects the surface of the organ of interest and then displays this surface on a screen.

Data Display

The tracking of boundaries in multidimensional medical images.

We became interested in the problems associated with boundary tracking in multidimensional spaces due to our involvement in medical imaging. We give as background our motivation from medicine. We define objects and their surfaces in discrete three-dimensional space and the state of the art in three-dimensional boundary tracking. Discussed are generalizations, conjectures, and open problems. Finally, we discuss what seems to us a suitable mathematical framework for future research in this area.

Algorithms

Reconstruction of objects from diverging x rays.

Rotation of a system consisting of a single x-ray source and a linear detector array allows rapid collection of x-ray projection data from which transaxial cross sections can be reconstructed. In this paper, we present an algorithm which makes possible rapid computerized reconstruction from such data. We describe some experiments aimed at investigating the optimal choice of some of the parameters associated with the algorithm. We report on reconstructions using our algorithm of the intact thorax of a dog and also of cross sections of the human female breast from x-ray data obtained by a computerized mammography machine.

Animals