A neural network model of the cortico-hippocampal interplay and the representation of contexts.
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Animals↗
Biomedical subjects
G Palm
Publications and source records attributed to G Palm.
Detecting higher-order interactions among the spiking events in a group of neurons.
We propose a formal framework for the description of interactions among groups of neurons. This framework is not restricted to the common case of pair interactions, but also incorporates higher-order interactions, which cannot be reduced to lower-order ones. We derive quantitative measures to detect the presence of such interactions in experimental data, by statistical analysis of the frequency distribution of higher-order correlations in multiple neuron spike train data. Our first step is to represent a frequency distribution as a Markov field on the minimal graph it induces. We then show the invariance of this graph with regard to changes of state. Clearly, only linear Markov fields can be adequately represented by graphs. Higher-order interdependencies, which are reflected by the energy expansion of the distribution, require more complex graphical schemes, like constellations or assembly diagrams, which we introduce and discuss. The coefficients of the energy expansion not only point to the interactions among neurons but are also a measure of their strength. We investigate the statistical meaning of detected interactions in an information theoretic sense and propose minimum relative entropy approximations as null hypotheses for significance tests. We demonstrate the various steps of our method in the situation of an empirical frequency distribution on six neurons, extracted from data on simultaneous multineuron recordings from the frontal cortex of a behaving monkey and close with a brief outlook on future work.
Action Potentials↗
Molecular characterization of native and recombinant apolipoprotein A-IMilano dimer. The introduction of an interchain disulfide bridge remarkably alters the physicochemical properties of apolipoprotein A-I.
The disulfide-linked dimer of apolipoprotein A-IMilano (A-IM/A-IM), a natural Arg173-->Cys variant of apoA-I, was purified from carriers' plasma and produced in Escherichia coli. The recombinant A-IM/A-IM is identical to native A-IM/A-IM, by mass spectrometry, SDS-polyacrylamide gel electrophoresis, and isoelectric focusing. Lipid-free A-IM/A-IM undergoes concentration-dependent self-association similar to apoA-I, but at all concentrations apoA-I is more self-associated than A-IM/A-IM. Far-ultraviolet CD spectra of A-IM/A-IM reveal a highly alpha-helical structure predicted to be approximately 65% in the lipid-free and approximately 78% in the lipid-associated states, versus 43 and 73% for apoA-I. A significant loss of alpha-helix occurs below pH 3.5 and above pH 10 in both apoA-I and A-IM/A-IM; A-IM/A-IM constantly shows a higher alpha-helical content than apoA-I over the entire pH range (1.7-12.8), suggesting that hydrophobic forces stabilize the interaction between the two A-IM chains. Indeed, and differently from apoA-I, the alpha-helical content of A-IM/A-IM is minimally affected by solvent ionic strength. The aromatic side chains in both lipid-free and lipid-bound A-IM/A-IM are immobilized in a more asymmetric and hydrophobic environment than in lipid-free apoA-I, the conformation of A-IM/A-IM being instead similar to that achieved by apoA-I following interaction with lipids. The present findings prove that rA-IM/A-IM is structurally identical to the native protein; the conformation of A-IM/A-IM is remarkably different from that of apoA-I, thus possibly explaining some of the peculiar functional properties of the apoA-IMilano dimer.
Amino Acid Sequence↗
Disulfide exchange folding of insulin-like growth factor I.
The disulfide exchange folding properties of insulin-like growth factor I (IGF-I) have been analyzed in a redox buffer containing reduced (10 mM) and oxidized (1 mM) glutathione. Under these conditions, the 3 disulfide bridges of the 70 amino acid peptide were not quantitatively formed. Instead, five major forms of IGF-I were detected, and these components were concluded to be in equilibrium as their relative amounts were similar starting from either reduced, native, or a mismatched variant of IGF-I containing two non-native disulfides. The different components in the mixtures were trapped by thiol alkylation using vinylpyridine and subsequently isolated by reverse-phase HPLC. The purified variants were further characterized using plasma desorption mass spectrometry and peptide mapping. Two of the five different forms were identified as native and mismatched IGF-I. One form was a variant with only one disulfide bond, and the other two major components had two disulfides formed. In a separate experiment, early refolding intermediates were trapped by pyridylethylation after only 90 s of refolding in the glutathione buffer, starting from reduced IGF-I. The intermediates were identical to the components observed at equilibrium, but at different relative concentrations. On the basis of the disulfide bond patterns of the different components in the equilibrium mixtures, we conclude that the disulfide between cysteines-47 and -52 in IGF-I is an unfavorable high-energy bond that may exist in the native molecule in a strained configuration.
Alkylation↗
Perceptual rivalry between illusory and real contours.
The interactions between illusory and real contours have been investigated under monocular, binocular and dichoptic conditions. Results show that under all three presentation conditions, periodic alterations, generally called rivalry, occur during the perception of cognitive (or illusory) triangles, while earlier research had failed to find such rivalry (Bradley and Dumais 1975). With line triangles, rivalry is experienced only under dichoptic conditions. A model is proposed to account for the observed phenomena.
Computer Simulation↗
Separation and characterization of modified variants of recombinant human insulin-like growth factor I derived from a fusion protein secreted from Escherichia coli.
Human insulin-like growth factor I, IGF-I, was produced in Escherichia coli fused to a synthetic IgG-binding peptide The fusion protein is secreted into the medium during fermentation and was initially purified on an IgG-Sepharose column. After hydroxylamine cleavage, IGF-I was purified to homogeneity. During purification, impurities in the form of modified variants of IGF-I were detected and characterized. The closely related impurities were identified to be a misfolded form of IGF-I, having mismatched disulphide bonds, a form with the single methionine residue in IGF-I oxidized to methionine sulphoxide and a variant in which the methionine residue was substituted by a norleucine residue during protein synthesis. A form proteolytically cleaved between two arginine residue was also detected. These impurities were separated from the major component, native IGF-I, by using reverse-phase h.p.l.c. The modified molecules as well as native IGF-I were characterized both as intact molecules and as fragments, after pepsin digestion, using the techniques of plasma desorption m.s., N-terminal sequencing and amino acid analysis. The oxidized form was 90%, and the norleucine analogue was 70%, as potent as native IGF-I in a biological radioreceptor assay, and the form having mismatched disulphides lacked receptor affinity.
Amino Acid Sequence↗
Density of neurons and synapses in the cerebral cortex of the mouse.
Quantitative anatomical investigations provide the basis for functional models. In this study the density of neurons and synapses was measured in three different areas (8, 6, and 17) of the neocortex of the mouse. Both kinds of measurements were made on the same material, embedded in Epon/Araldit. In order to determine the synaptic density per mm3, the proportion of synaptic neuropil was also measured; it was found to be 84%. The cortical volume occupied by cell bodies of neurons and glia cells amounted to 12%, that by blood vessels to 4%. The total average was 9.2 x 10(4) neurons/mm3 and 7.2 x 10(8) synapses/mm3. About 11% of the synapses were of type II. The density of neurons increased with decreasing cortical thickness; thus the number of neurons under a given surface area was about constant. The synaptic density, on the other hand, was almost constant in the three areas, the number of synapses under a given cortical surface area tended, therefore, to increase with cortical thickness. The average number of synapses per neuron was 8,200, with a tendency to increase with increasing cortical thickness. Shrinkage of the tissue was also measured for various staining techniques. No shrinkage occurred during perfusion with 3.7% formaldehyde or with a solution of buffered paraformaldehyde and glutaraldehyde and during fixation in situ. Electron microscopical material showed almost no shrinkage, whereas Nissl-preparations on paraffin-embedded material had only 43% of their original volume. After Nissl stain on frozen sections the volume had shrunken to 68% and after Golgi impregnation and embedding in celloidin to 70%. The total volume of the neocortex was 112 mm3 (both hemispheres together). The total number of neurons was thus 1.0 x 10(7) and the total number of synapses 8.1 x 10(10).
Animals↗
Dynamics of neuronal firing correlation: modulation of "effective connectivity".
1. We reexamine the possibilities for analyzing and interpreting the time course of correlation in spike trains simultaneously and separably recorded from two neurons. 2. We develop procedures to quantify and properly normalize the classical joint peristimulus time scatter diagram. These allow separation of the "raw" correlation into components caused by direct stimulus modulations of the single-neuron firing rates and those caused by various types of interaction between the two neurons. 3. A newly developed significance test ("surprise") is applied to evaluate such inferences. 4. Application of the new procedures to simulated spike trains allowed the recovery of the known circuitry. In particular, it proved possible to recover fast stimulus-locked modulations of "effective connectivity," even if they were masked by strong direct stimulus modulations of individual firing rates. These procedures thus present a clearly superior alternative to the commonly used "shift predictor." 5. Adopting a model-based approach, we generalize the classical measures for quantifying a direct interneuronal connection ("efficacy" and "contribution") to include possible stimulus-locked time variations. 6. Application of the new procedures to real spike trains from several different preparations showed that fast stimulus-locked modulations of "effective connectivity" also occur for real neurons.
Animals↗
On the significance of correlations among neuronal spike trains.
We consider several measures for the correlation of firing activity among different neurons, based on coincidence counts obtained from simultaneously recorded spike trains. We obtain explicit formulae for the probability distributions of these measures. This allows an exact, quantitative assessment of significance levels, and thus a comparison of data obtained in different experimental paradigms. In particular it is possible to compare stimulus-locked, and therefore time dependent correlations for different stimuli and also for different times relative to stimulus onset. This allows to separate purely stimulus-induced correlation from intrinsic interneuronal correlation. It further allows investigation of the dynamic characteristics of the interneuronal correlation. For the display of significance levels or the corresponding probabilities we propose a logarithmic measure, called "surprise".
Animals↗
A model of direction-selective "simple" cells in the visual cortex based on inhibition asymmetry.
Direction selectivity is a prominent feature of single units in the central visual pathway of cat and monkey. Various mechanisms have been proposed for the generation of this property. Experimental evidence suggests that intracortical inhibition is a major factor contributing to direction selectivity. We have developed a one-dimensional computer model for direction selective simple cells in the visual cortex under two basic assumptions: 1) Inhibition is exerted upon a cortical cell by neighboring cells from either side within a retinotopic array, 2) The relative strength of inhibition from both neighbors can be varied, interneurons always having larger time constants than the simple cells. Summation in the model is linear, but is followed by an essential non-linearity. ON- and/or OFF-center cells of the sustained type (X-cells) are used as an input to the simple cells. The computer simulation demonstrates that various subtypes of direction-selective simple cells in area 17, as described by Schiller et al. (1976), can be generated by different amounts of inhibition asymmetry, different delays and by different spatial arrangements of the input. Only one type of input (ON or OFF) is required to generate direction selectivity, but a greater variety of cell subtypes is created by combining both. Length-summation, contributing to orientation selectivity, was not considered in this one-dimensional model.
Animals↗
A gene fusion system for generating antibodies against short peptides.
A novel method to obtain specific antibodies against short peptides is described, involving synthesis of the corresponding oligodeoxynucleotides followed by cloning into a new set of fusion vectors, pEZZ8 and pEZZ18, based on two synthetic IgG-binding domains (ZZ) of Staphylococcus aureus protein A. The soluble gene fusion product thus obtained, can be collected from the culture medium of Escherichia coli and rapidly recovered in a one-step procedure by IgG affinity chromatography. The system was used to express a fusion protein consisting of the two Z fragments and the C-terminal part [amino acids (aa) 57-70] of human insulin-like growth factor I (IGF-I). This 16-kDa protein was purified by affinity chromatography on IgG Sepharose and antibodies were raised in rabbits. The fusion protein elicited peptide-specific antibodies, as measured by solid-phase radioimmuno assay and Western blotting, reactive with both synthetic C-terminal peptide and the native human IGF-I protein. The results suggests that the gene fusion system can be used for efficient antibody production against short peptides encoded by synthetic oligodeoxynucleotides.
Amino Acid Sequence↗
Spatiotemporal receptive fields: a dynamical model derived from cortical architectonics.
We assume that the mammalian neocortex is built up out of some six layers which differ in their morphology and their external connections. Intrinsic connectivity is largely excitatory, leading to a considerable amount of positive feedback. The majority of cortical neurons can be divided into two main classes: the pyramidal cells, which are said to be excitatory, and local cells (most notably the non-spiny stellate cells), which are said to be inhibitory. The form of the dendritic and axonal arborizations of both groups is discussed in detail. This results in a simplified model of the cortex as a stack of six layers with mutual connections determined by the principles of fibre anatomy. This stack can be treated as a multi-input-multi-output system by means of the linear systems theory of homogeneous layers. The detailed equations for the simulation are derived in the Appendix. The results of the simulations show that the temporal and spatial behaviour of an excitation distribution cannot be treated separately. Further, they indicate specific processing in the different layers and some independence from details of wiring. Finally, the simulation results are applied to the theory of visual receptive fields. This yields some insight into the mechanisms possibly underlying hypercomplexity, putative nonlinearities, lateral inhibition, oscillating cell responses, and velocity-dependent tuning curves.
Afferent Pathways↗
Volterra representation and Wiener-like identification of nonlinear systems: scope and limitations.
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Cybernetics↗
Parallel processing for associative and neuronal networks.
We represent a parallel processing network, consisting of nine microcomputers, for neuron-network simulations and for the realization of an associative computer memory. We add some remarks on the present possibilities to implement larger associative networks and on parallel processing strategies in general.
Association↗
Automatic synthesis of oligodeoxynucleotides and mixed oligodeoxynucleotides using the phosphoamidite method.
A simplified procedure for making and using the deoxynucleoside phosphoamidites (1 a-d) in the automated synthesis of oligodeoxynucleotides has been developed. The reagents prepared show good stability in solution. The reactivity of the reagents was found to be directly proportional to their concentrations, which makes it possible to synthesize mixed oligomers in desired ratios. Oligomers up to 45-mer have been synthesized using a coupling cycle of twenty min.
Chemical Phenomena↗
Calculation of surface areas from serial sections.
A new method is introduced to determine the surface area of an anatomical structure from serial sections. For highly folded surfaces the new method is more adequate than previously used methods.
Animals↗
Isolation of cDNA sequences coding for a part of human tissue plasminogen activator.
We have isolated a cDNA sequence coding for a part of human tissue plasminogen activator. mRNA coding for tissue plasminogen activator was partially purified, copied into double-stranded cDNA, and cloned into Escherichia coli. Two sets of partially overlapping oligodeoxynucleotide mixtures corresponding to all possible coding sequences for a known portion of the tissue plasminogen activator gene were prepared. One set was used as a probe to screen cDNA containing bacterial clones and both were used as probes in hybridization against purified plasmid DNA. Of 4,200 bacterial clones examined, 1 carried a plasmid that hybridized to both sets of oligonucleotides. This plasmid contained a 370-base-pair cDNA insert, which was shown by nucleotide sequence analysis to code for the cleavage site region in the one-chain form of the human tissue plasminogen activator.
Amino Acid Sequence↗
[Malta fever in a brucellosis free region: analysis of a malta fever outbreak in the Göttingen area 1982].
During April/Mai 1982 15 patients were affected with acute Malta fever around Goettingen an area known the be brucellosis-free until then. The source of infections were local flocks of sheep. The infections were mainly acquired when assisting at lamb birth or abortions. Between onset and diagnosis of the disease intervals up to 3 month occurred. Diagnostically crucial were blood cultures and serological tests. Therapy with tetracyclines or co-trimoxazole were effective in all cases. In patients with status febrilis and anamnestic contact with brucellosis-prone animals brucellosis should be considered, even if the local area appears to be brucellosis-free.
Animals↗