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Biomedical subjects

G L Murphy

Publications and source records attributed to G L Murphy.

At least 55 records · Page 3Linked to original sources

Detection of Anaplasma marginale DNA in bovine erythrocytes by slot-blot and in situ hybridization with a PCR-mediated digoxigenin-labeled DNA probe.

A 409-base pair (bp) DNA fragment derived from the msp-1 beta gene of Anaplasma marginale was amplified and simultaneously labeled with digoxigenin-11-dUTP by a polymerase chain reaction (PCR) assay. The resulting digoxigenin-labeled 409-bp PCR product was used as a probe for slot-blot and in situ hybridization to detect A. marginale DNA from experimentally infected bovine erythrocytes. The hybrid formation was detected with alkaline phosphatase-conjugated anti-digoxigenin antibody and substrates 5-bromo-4-chloro-3-indolyl phosphate and nitroblue tetrazolium salt. In slot-blot hybridizations, the probe detected A. marginale DNA from approximately 1,000-10,000 infected erythrocytes in 1.25 ml of whole blood, which is equivalent to a parasitemia level of 0.00001%. The probe proved to be a A. marginale-specific when tested with 17 species of microorganisms. The applicability of the probe for diagnosis was tested by screening A. marginale infections in 2 experimentally infected splenectomized cattle before microscopically detectable parasitemias and after acute infection. After inoculation of infected blood, A. marginale infections were detected with the probe 14 days prior to detection in stained smears. Microscopically inapparent parasitemias were also detected with the probe for 2 months after acute disease. When the probe was used for in situ hybridization on methanol-fixed blood smears, probe reaction could be visualized with light microscopy on A. marginale inclusions within infected erythrocytes. The probe reaction was not observed on leukocytes and uninfected erythrocytes from infected blood smears, on erythrocytes from uninfected blood samples, or on samples infected with A. ovis, Babesia bovis, or B. bigemina. This PCR-mediated nonradioactive probe appears to be a sensitive diagnostic test for A. marginale.

Anaplasma↗

Construction of isogenic mutants of Pasteurella haemolytica by allelic replacement.

We describe methods for the mutagenesis of cloned Pasteurella haemolytica (Gram-) genes and for the construction of P. haemolytica mutants by allelic exchange. We used these methods to construct isogenic mutants of P. haemolytica which no longer synthesize three membrane lipoproteins (Lpp). A single genetic locus, consisting of three tandemly arranged genes encoding 28-30-kDa membrane Lpp, was replaced with a mutated locus which carries the beta-lactamase-encoding ApR gene from a 4.2-kb P. haemolytica plasmid. The inactivated locus was introduced into P. haemolytica by electroporation of a plasmid which carries the mutated locus, but is incapable of replicating in P. haemolytica. Southern and Western blot analyses indicate that the wild-type locus was replaced by the mutated locus through a double-crossover recombination event and that the membrane Lpp were no longer produced by the mutant strain. These methods should be useful in constructing mutant loci which can be used to analyze the roles for various P. haemolytica proteins in the pathogenesis of bovine pneumonic pasteurellosis.

Alleles↗

Predictions from uncertain categorizations.

Eleven experiments investigated how categorization influences feature prediction. Subjects were provided with sets of categorized exemplars, which they used to make predictions about properties of new exemplars. Because the categories were provided for subjects, this method allowed a test of categorization and prediction processes, bypassing initial concept formation and memory. The experiments tested a Bayesian rule of prediction according to which (1) predictions of an object's features are based on information from multiple categories, and (2) features are treated as independent of one another. With one exception, the studies found evidence against both of these claims. Subjects did not generally alter their predictions as a function of information outside the most likely "target" category. In addition, feature relations had reliable effects on these predictions. We discuss the implications of these results for understanding how categories are used in drawing inferences.

Concept Formation↗

Expression, purification and immunologic analysis of three Pasteurella haemolytica A1 28-30 kDa lipoproteins.

Three genes, tandemly arranged on the Pasteurella haemolytica A1 chromosome and encoding similar 28-30 kDa proteins, were previously cloned and sequenced by our laboratory. In this study, we demonstrate that the cloned genes encode lipoproteins, as previously suggested by DNA sequence analysis. To further analyze the bovine immune response to these proteins, the individual genes were cloned separately into an expression vector and recombinant forms of the three proteins were purified after expression in Escherichia coli. Sera from cattle vaccinated with live P. haemolytica or P. haemolytica bacterins and from cattle naturally exposed to P. haemolytica recognized each of the recombinant proteins. Vaccination with live or killed whole bacteria did not elicit an immune response of the same quality as that which developed in response to natural infection. A statistically significant correlation existed between resistance to challenge and a high antibody response to one of these three proteins.

Amino Acid Sequence↗

The locus of knowledge effects in concept learning.

Three experiments investigated how knowledge influences concept formation and representation in a standard concept acquisition task. The primary comparison was among arbitrary concepts, which had meaningless features; meaningful concepts, which had meaningful features from different domains; and integrated concepts, which had meaningful features interconnected by common knowledge. Experiment 1 found that learning was superior for the integrated concepts but that there was little difference as a function of feature meaningfulness. Experiment 2 suggested that the integrated Ss were learning to form a knowledge-based schema as their concept representation because they did not distinguish the typicality of features that differed in frequency. Experiment 3 introduced a category whose features were from the same domain but were not otherwise related. This concept was as difficult to learn and use as the meaningful concepts were. These comparisons help specify the ways in which knowledge does and does not influence concept formation.

Concept Formation↗

Forgetting of verbatim information in discourse.

In three experiments, the causes of forgetting of verbatim information in discourse were investigated. In Experiment 1, we tested the view that the surface form of a sentence decays when linguistic elements are integrated into larger discourse structures. Contrary to such a view, the results showed that when text could be integrated, both content and verbatim memory improved. In Experiment 2, we examined the possibility that task instructions could influence the level of memory for exact wording and content. The results showed that although task did influence the amount of verbatim memory, it did not affect memory for content. Experiment 3 was an investigation of the degree to which subjects would spontaneously encode surface information on the basis of the social interactiveness of the sentences. Past research has shown that verbatim memory for insults, jokes, and other personal utterances is quite good. In this experiment, identical sentences were tested in texts that had high versus low interactiveness. Verbatim memory was much higher for the same sentences in the highly interactive context. A pragmatic account of verbatim memory is given to explain how content and instructions influence the encoding of surface form.

Communication↗

Analysis of tandem, multiple genes encoding 30-kDa membrane proteins in Pasteurella haemolytica A1.

A number of outer membrane proteins (OMPs), including a 30-kDa protein, may be important in eliciting immunity to Pasteurella haemolytica A1, the causative agent of bovine pneumonic pasteurellosis. To better understand the nature of the 30-kDa antigen, several genes encoding this protein were sequenced. Sequence analysis revealed that three separate genes encoding similar, yet distinct, versions of the 30-kDa protein are tandemly arranged on the P. haemolytica A1 chromosome. The genes appear to be transcribed from a single promoter. The deduced amino acid sequences of the proteins encoded by these genes are similar to a 28-kDa inner membrane lipoprotein of Escherichia coli and a 28-kDa membrane protein which may contribute to the virulence of Haemophilus influenzae type b strains.

Amino Acid Sequence↗

Restriction endonuclease analysis and ribotyping differentiate Pasteurella haemolytica serotype A1 isolates from cattle within a feedlot.

Pasteurella haemolytica serotype A1 isolates were collected from cattle within a feedlot during an outbreak of bovine respiratory disease. Genetic heterogeneity among the isolates was examined by restriction endonuclease analysis (REA), ribotyping, and analysis of plasmid content. The susceptibilities of isolates to several antibiotics were also examined. Five different REA patterns and three different ribotypes were observed among the isolates. Fifty percent of the isolates had an identical REA type, ribotype, and plasmid profile. Examination of the plasmid content of the isolates revealed that most (73%) carry a single plasmid which encodes beta-lactamase, 13.5% carry two plasmids, and 13.5% carry no plasmid. The data reveal the presence of genetic differences among isolates of P. haemolytica A1, associated with shipping fever pneumonia within a closed feedlot, and suggest that a combination of REA, ribotyping, plasmid analysis, and antibiotic susceptibility determination will be useful in analyzing the molecular epidemiology of this disease.

Animals↗

Metaphoric reference: when metaphors are not understood as easily as literal expressions.

Gibbs (1990) found that metaphoric referential descriptions take longer to read than literal references, in contrast to the usual result that metaphors and literal sentences are about equally easy to comprehend. This study was performed as an investigation of Gibb's finding. In Experiment 1, subjects received story contexts in which characters clearly shared knowledge relevant to the metaphoric referring term. In Experiment 2, we tried to ensure that the intended referent was very salient by mentioning it in the sentence just prior to the crucial sentence. Neither of these manipulations eliminated the large response time advantage for literal referring expressions. In Experiment 3, the same metaphors were used as sentence predicates rather than as referring expressions: the metaphors were no more difficult to understand than literal paraphrases. Possible explanations for the difficulty of metaphoric references, as opposed to metaphoric predicates, are discussed.

Adolescent↗

Detection of Borrelia burgdorferi in tissues of experimentally infected Peromyscus leucopus by the polymerase chain reaction.

A polymerase chain reaction (PCR) assay was used to amplify a 158 base pair (bp) DNA fragment from the ospA locus of Borrelia burgdorferi. This assay could identify all of four distinct B. burgdorferi isolates from Oklahoma and could detect as little as 50 x 10(-15) g of purified DNA from B. burgdorferi (JD-1) after agarose gel electrophoresis and ethidium bromide staining. The assay was used to detect the Lyme spirochete in the heart, liver, spleen, kidney and urinary bladder of four experimentally infected Peromyscus leucopus and results were compared with detection by in vitro cultivation in BSK-II media. Fifteen of twenty organs examined showed 158 bp amplification products. Except for one kidney sample all organs that were culture-positive were also positive by PCR. Two culture-negative heart samples and one culture-negative liver sample were PCR positive. The results indicate that this PCR assay may be useful for detection of B. burgdorferi from field-caught wildlife hosts in epidemiological investigations.

Animals↗

Theory-based correlations and their role in children's concepts.

Recent accounts of conceptual development have emphasized the important role intuitive theories play in concept formation; however, it is still not clear exactly how these theories exert their influence. We present evidence that elementary school age children use theories to link together specific features associated with individual concepts. The results of our first experiment indicate that theory-based correlations play a prominent role in typicality judgments and in decisions about category membership. In a second experiment, we demonstrate that children's theories play an important role in determining which attributes will be considered most central to the concept. The results of these studies suggest that feature correlations can serve to link children's concepts with their intuitive theories of the world.

Child↗

Persistence of tick-derived Anaplasma marginale in cultured bovine turbinate and endothelial cells.

Anaplasma marginale from salivary glands of Dermacentor andersoni was used to inoculate monolayers of bovine turbinate and endothelial cells. Monolayers were passaged at 2 or 4 week intervals and monitored with light and electron microscopy and with an A. marginale-specific DNA probe. Intracellular inclusions were observed in turbinate cells after 2-4 weeks. The number of inclusion-bearing cells increased over 1-2 weeks and gradually disappeared. A radiolabeled fragment from within the msp1 beta gene of the erythrocytic stage of A. marginale hybridized to DNA extracted from bovine turbinate cell cultures as late as 7 weeks post inoculation (passage 4). Individual rickettsiae were observed with electron microscopy in samples taken at this time. Susceptible calves inoculated with suspect cultures did not develop clinical anaplasmosis but did develop significant antibody titers as detected with ELISA. DNA from endothelial cell cultures at 9 weeks post inoculation also bound the Anaplasma-specific DNA probe. Anaplasma marginale from salivary glands of D. andersoni appears to persist in cultured bovine turbinate and endothelial cells but typical development and infectivity for bovines do not occur.

Anaplasma↗

Isolation of Borrelia burgdorferi (Spirochaetales: Spirochaetaceae) from Ixodes scapularis and Dermacentor albipictus ticks (Acari: Ixodidae) in Oklahoma.

Borrelia burgdorferi was isolated from Ixodes scapularis Say and Dermacentor albipictus Packard that were removed as partially fed adults from white-tailed deer, Odocoileus virginianus Zimmermann, in Oklahoma. Isolation in media was accomplished only after homogenates of pooled field-collected ticks were inoculated into laboratory-reared Peromyscus leucopus and reisolated from the urinary bladder into BSK II media. Both isolates were confirmed by western blot analysis and reactivity with monoclonal antibody H5332. These are the first reported isolates of B. burgdorferi from Oklahoma from these two tick species and are the first isolates from ticks from the south-central United States that were infective for laboratory-reared P. leucopus.

Animals↗

Attempted transmission of Borrelia burgdorferi (Spirochaetales: Spirochaetaceae) (JDI strain) by Ixodes scapularis (Acari: Ixodidae), Dermacentor variabilis, and Amblyomma americanum.

Laboratory-reared Ixodes scapularis Say, Amblyomma americanum (L.), and Dermacentor variabilis (Say) were fed on New Zealand white rabbits experimentally infected with Borrelia burgdorferi (JDI strain). At repletion, spirochetes could be detected by dark-field microscopy only in I. scapularis. Acquisition rates were 18 and 21%. When previously exposed nymphs of each species were fed on susceptible rabbits, I. scapularis was the only tick of the three species that transmitted B. burgdorferi. When a single rabbit was experimentally infected with B. burgdorferi and infested at 7-d intervals with I. scapularis, A. americanum, D. variabilis, and a second time with I. scapularis, B. burgdorferi was detected again only in cultures from the two groups of I. scapularis. When molted nymphs from each tick species were allowed to feed on susceptible rabbits, spirochetes again were isolated only at necropsy from the rabbits on which the two groups of I. scapularis fed.

Animals↗

Isolation of Borrelia burgdorferi from Peromyscus leucopus in Oklahoma.

Borrelia burgdorferi was isolated from a field-caught Peromyscus leucopus from central Oklahoma (USA). The strain was identified as B. burgdorferi by reaction with monoclonal antibody H5332 specific for the outer surface protein OspA of B. burgdorferi. This represents the first isolation of B. burgdorferi from a wild mouse outside of the normal range of the known vectors Ixodes dammini and I. pacificus.

Animals↗

Analysis of two genes encoding heat-labile toxins and located on a single Ent plasmid from Escherichia coli.

A clinical isolate of Escherichia coli harbored two copies of the heat-labile toxin (LT)-encoding gene (elt) on a 157-kb plasmid. The arrangement of the gene copies is different from the cholera toxin-encoding gene duplication described for some strains of Vibrio cholerae. The nucleotide sequences of the elt alleles are not identical (differing by 2 bp) and the duplicated region flanking the alleles extends 314 bp on one side and 1122 bp on the other side of each copy. Different partial copies of IS600 were identified 280 bp 3' to the stop codon of each allele. Partial and complete copies of other IS were also identified near the elt alleles. The data suggest that the regions surrounding the genes are hot spots for IS which would account for the observed heterogeneity in DNA flanking elt genes.

Bacterial Toxins↗

Parts in object concepts: experiments with artificial categories.

Previous research has demonstrated that basic-level categories are associated with the parts of objects. Five experiments were conducted to investigate whether this correlation is caused by a psychological principle that requires basic concepts to have common parts. This hypothesis was investigated in the experiments by separating part and nonpart information in artificial categories. Basic-level structure was measured in two ways: as the level with the highest ratio of within-category similarity to between-category similarity, and as the level with the fastest categorization time in an object-identification task. The results revealed that basic-level structure could be found in categories that did not have parts in common. Furthermore, nonpart information, such as size, color, and texture, could both enhance the basic level and eliminate the basic-level advantage, depending on whether the nonpart information was consistent with or contradicted the part information. These results suggest that, psychologically, parts are neither necessary nor sufficient to form a basic level.

Attention↗