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Biomedical subjects

G Kresse

Publications and source records attributed to G Kresse.

At least 19 recordsLinked to original sources
PubMed2006

Relaxed core projector-augmented-wave method.

We extend the full-potential projector-augmented-wave method beyond the frozen core approximation, i.e., include the self-consistent optimization of the core charge density, in such a manner that the valence wave functions remain orthogonal to the core. The method consists of an on-the-fly repseudization of the all-electron problem, solving for the self-consistent core charge density within a spherical approximation. The key ideas in our procedure are to keep the projector functions fixed throughout the electronic minimization and to derive the new pseudopartial waves from these original projector functions, at each step of the electronic minimization procedure. Results of relaxed core calculations for atomic interconfigurational energies, structural energy differences between bulk phases of Fe, atomization energies of a subset of Pople's G2-1 set, and the Rh 3d surface core level shifts for the (log3 x log3)-Rh(111) surface at 1/3 CO coverage are presented.

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PubMed2006

Initial oxidation of the Rh(110) surface: ordered adsorption and surface oxide structures.

The initial oxidation of the Rh(110) surface was studied by scanning tunneling microscopy, core level spectroscopy, and density functional theory. The experiments were carried out exposing the Rh(110) surface to molecular or atomic oxygen at temperatures in the 500-700 K range. In molecular oxygen ambient, the oxidation terminates at oxygen coverage close to a monolayer with the formation of alternating islands of the (10x2) one-dimensional surface oxide and (2x1)p2mg adsorption phases. The use of atomic oxygen facilitates further oxidation until a structure with a c(2x4) periodicity develops. The experimental and theoretical results reveal that the c(2x4) structure is a "surface oxide" very similar to the hexagonal O-Rh-O trilayer structures formed on the Rh(111) and Rh(100) substrates. Some of the experimentally found adsorption phases appear unstable in the phase diagram predicted by thermodynamics, which might reflect kinetic hindrance. The structural details, core level spectra, and stability of the surface oxides formed on the three basal planes are compared with those of the bulk RhO2 and Rh2O3.

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PubMed2006

Oxygen-deficient line defects in an ultrathin aluminum oxide film.

A model for the straight antiphase domain boundary of the ultrathin aluminum oxide film on the NiAl(110) substrate is derived from scanning tunneling microscopy measurements and density-functional theory calculations. Although the local bonding environment of the perfect film is maintained, the structure is oxygen deficient and possesses a favorable adsorption site. The domain boundary exhibits a downwards band bending and three characteristic unoccupied electronic states, in excellent agreement with scanning tunneling spectroscopy measurements.

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PubMed2006

Screened hybrid density functionals applied to solids.

Hybrid Fock exchange/density functional theory functionals have shown to be very successful in describing a wide range of molecular properties. For periodic systems, however, the long-range nature of the Fock exchange interaction and the resultant large computational requirements present a major drawback. This is especially true for metallic systems, which require a dense Brillouin zone sampling. Recently, a new hybrid functional [HSE03, J. Heyd, G. E. Scuseria, and M. Ernzerhof, J. Chem. Phys. 118, 8207 (2003)] that addresses this problem within the context of methods that evaluate the Fock exchange in real space was introduced. We discuss the advantages the HSE03 functional brings to methods that rely on a reciprocal space description of the Fock exchange interaction, e.g., all methods that use plane wave basis sets. Furthermore, we present a detailed comparison of the performance of the HSE03 and PBE0 functionals for a set of archetypical solid state systems by calculating lattice parameters, bulk moduli, heats of formation, and band gaps. The results indicate that the hybrid functionals indeed often improve the description of these properties, but in several cases the results are not yet on par with standard gradient corrected functionals. This concerns in particular metallic systems for which the bandwidth and exchange splitting are seriously overestimated.

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PubMed2006

Structure of Ag(111)-p(4 x 4)-O: no silver oxide.

The structure of the oxygen-induced p(4 x 4) reconstruction of Ag(111) is determined by a combination of scanning tunneling microscopy, surface x-ray diffraction, core level spectroscopy, and density functional theory. We demonstrate that all previous models of this surface structure are incorrect and propose a new model which is able to explain all our experimental findings but has no resemblance to bulk silver oxide. We also shed some light on the limitations of current density functional theories and the potential role of van der Waals interactions in the stabilization of oxygen-induced surface reconstructions of noble metals.

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PubMed2005

Ab initio density-functional study of the bridging addition of acrylonitrile on the Si(100) surface.

Acrylonitrile may react with the Si(100) surface in a number of ways. Fifteen different configurations have been identified. This study which complements an earlier study devoted to cycloadditions and bonds involving a single atom deals essentially with configurations involving cumulative double bonds. Factors affecting the relative stability of various mesomeric forms are shown to be the proximity to tetrahedral geometry and the compatibility of the dipole form with buckled structures. Tripods are shown to be a way to accommodate a priori unfavorable structures.

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PubMed2004

High-coverage oxygen structures on Rh111: adsorbate repulsion and site preference is not enough.

A new O induced structure on Rh(111) displaying a (2 sqaureroot[3] x 2sqaureroot[3])R30 degrees periodicity with an oxygen coverage of 2/3 has been studied by high resolution core level spectroscopy, scanning tunneling microscopy, and density functional theory. Although O favors fcc hollow sites in all other known phases, it occupies both fcc and hcp sites in this structure, which cannot be explained by pairwise adsorbate repulsion only. Both the (2sqaureroot[3] x 2sqaureroot[3])R30 degrees and (2 x 2)-3O structures also exemplify that density-of-states contrast can lead to oxygen adatoms appearing as protrusions in scanning tunneling microscopy images.

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PubMed2004

Fullerene quantum gyroscope.

We report the observation of quantized rotational states of a diatomic C2 unit in solid endohedral fullerene C(2)Sc(2)@C(84). The rotational transitions induce a periodic line pattern in the low energy Raman spectrum. The rotational constant B and the C-C distance were found to be 1.73 cm(-1) and 0.127 nm, respectively. Density functional calculations revealed an intrinsic rotational barrier of the order of only a few meV for the C2 unit. The Schrödinger equation involving the potential barrier was solved and the Raman tensor matrix elements were calculated, yielding good quantitative agreement with the experiment. To our best knowledge this is the first intrinsic rotational spectrum of a diatomic plane molecular rotor.

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PubMed2004

Planar vanadium oxide clusters: two-dimensional evaporation and diffusion on Rh(111).

The formation of novel vanadium oxide cluster molecules by oxidative two-dimensional evaporation from vanadium oxide nanostructures is reported on a Rh(111) metal surface. The structure and stability of the planar V6O12 clusters and the physical origin of their 2D evaporation process have been elucidated by high-resolution scanning tunneling microscopy (STM) and ab initio density functional theory calculations. The surface diffusion of the clusters has been followed in elevated-temperature STM experiments, and the diffusion parameters have been extracted, indicating diffusion by hopping of the entire surface stabilized cluster units.

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PubMed2004

Self-limited growth of a thin oxide layer on Rh(111).

The oxidation of the Rh(111) surface at oxygen pressures from 10(-10) mbar to 0.5 bar and temperatures between 300 and 900 K has been studied on the atomic scale using a multimethod approach of experimental and theoretical techniques. Oxidation starts at the steps, resulting in a trilayer O-Rh-O surface oxide which, although not thermodynamically stable, prevents further oxidation at intermediate pressures. A thick corundum like Rh2O3 bulk oxide is formed only at significantly higher pressures and temperatures.

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PubMed2003

Novel stabilization mechanism on polar surfaces: ZnO(0001)-Zn.

The (1x1) terminated (0001)-Zn surface of wurtzite ZnO was investigated with scanning tunneling microscopy. The surface is characterized by the presence of nanosized islands with a size-dependent shape and triangular holes with single-height, O-terminated step edges. It is proposed that the resulting overall decrease of the surface Zn concentration stabilizes this polar surface. Ab initio calculations of test geometries predict triangularly shaped reconstructions over a wide range of oxygen and hydrogen chemical potentials. The formation of these reconstructions appears to be electrostatically driven.

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PubMed2002

Reversible dynamic behavior in catalyst systems: oscillations of structure and morphology.

Exposing vanadium oxide nanoparticles on a Pd(111) surface to reducing conditions is shown to cause a spreading of the oxide over the metal until a reduced oxide phase covers the entire surface. Reoxidation reverses this process and oxide island structures and bare metal patches are reestablished. The physical origin of this wetting-dewetting process is revealed at the atomic level by in situ variable-temperature scanning tunneling microscopy and in terms of a surface oxide phase stability diagram, as calculated by density functional theory as a function of the chemical potential of oxygen and the vanadium concentration.

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PubMed2002

Two-dimensional oxide on Pd(111).

The oxidation of Pd(111) leads to an incommensurate surface oxide, which was studied by the use of scanning tunneling microscopy, surface x-ray diffraction, high resolution core level spectroscopy, and density functional calculations. A combination of these methods reveals a two-dimensional structure having no resemblance to bulk oxides of Pd. Our study also demonstrates how the atomic arrangement of a nontrivial incommensurate surface can be solved by molecular dynamics in a case where experimental techniques alone give no solution.

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PubMed2002

Phonon softening in metallic nanotubes by a Peierls-like mechanism.

The radial dependency of the vibrational frequencies of single-wall carbon nanotubes in the G band (1500-1600 cm(-1)) is studied by density functional theory. In metallic nanotubes, a mode with A1 symmetry is found to be significantly softer than the corresponding mode in insulating tubes or graphite. The mechanism that leads to the mode softening is explored. It is reminiscent of the driving force inducing Peierls distortions. At ambient temperature, the energy gained by opening the gap is, however, not sufficient for a static lattice distortion. Instead the corresponding vibrational frequency is lowered.

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PubMed2001

Coexistence of atomic and molecular chemisorption states: H(2)/Pd(210).

A novel H(2) molecular adsorption state on metal surfaces has been detected by temperature-programmed desorption and electron energy loss spectroscopy experiments of the H(2)/Pd(210) system. The molecular nature of this state has been verified by isotope exchange experiments. This molecular state leads to a decrease of the surface work function while atomic hydrogen on Pd(210) causes an increase. Ab initio total-energy calculations have confirmed all experimental findings. Through these calculations the microscopic nature of this novel molecular adsorption state could be identified; it turns out that this state is stabilized by the presence of atomic hydrogen on the Pd(210) surface.

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PubMed2001

Novel interface-mediated metastable oxide phases: vanadium oxides on Pd(111).

In the growth process of ultrathin films of vanadium oxides on Pd(111), a sequence of novel oxide phases with layer-dependent structures and oscillating oxidation states has been detected experimentally and understood theoretically. These phases are interface mediated and metastable with respect to further oxide growth. Transformation into the stable oxide configuration occurs beyond a critical thickness, where energetics combined with kinetic limitations determine the oxide multilayer structure.

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PubMed2001

Adsorption sites and ligand effect for CO on an alloy surface: a direct view.

CO adsorption on a PtCo(111) surface was studied by scanning tunneling microscopy. Comparison of images with chemical contrast of Pt and Co and images showing the CO molecules indicates that CO resides exclusively on top of Pt sites and never on Co. CO bonding is highly sensitive to the chemical environment. The probability to find CO on a Pt atom increases drastically with the number of its Co nearest neighbors. Ab initio calculations show that this ligand effect is due to different positions of the center of the Pt d band.

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