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F Müller

Publications and source records attributed to F Müller.

At least 415 records · Page 23Linked to original sources

Chemical modification of sulfhydryl groups in p-hydroxybenzoate hydroxylase from Pseudomonas fluorescens. Involvement in catalysis and assignment in the sequence.

The cysteine residues in p-hydroxybenzoate hydroxylase from Pseudomonas fluorescens were modified with several cysteine reagents. One of the five sulfhydryl groups reacts rapidly and specifically with N-ethylmaleimide without inactivation of the enzyme. Cysteine-116 was found to be the reactive cysteine by isolation of a labeled tryptic peptide. The enzyme is easily inactivated by mercurial compounds. The original activity can be fully restored by treatment of the modified enzyme with sulfhydryl-containing compounds. The rate of incorporation of mercurial compounds is pH-independent and is pseudo-first-order up to 90-95% loss of activity. The reaction shows saturation kinetics. The substrate p-hydroxybenzoate protects the enzyme from fast inactivation. The mercurial compounds themselves inhibit the inactivation reaction at concentrations higher than 80 microM. A spin-labeled derivative of p-chloromercuribenzoate reacts fairly specifically with only Cys-152 on use of enzyme prelabeled with N-ethylmaleimide, in contrast to p-chloromercuribenzoate which reacts with additional cysteine residues, i.e. Cys-211 and Cys-158. From these results it is concluded that modification of Cys-152 decreases drastically the affinity of the enzyme for the substrate. The results strongly indicate that the substrate binding site and Cys-152 are interdependent. This observation is not obvious when the three-dimensional data only are considered. The modified enzyme exhibits a somewhat higher affinity for NADPH than the native enzyme. Modification of N-ethylmaleimide-prelabeled enzyme by p-chloromercuribenzoate leads to absorbance difference spectra showing maxima at 250 nm, 290 nm and 360 nm. The intensities of the absorbance difference maxima at 290 nm and 360 nm are strongly dependent on the pH value of the solution. The intensities are very low at low pH values and increase with increasing pH values, reaching a maximum at about pH = 9. The ionizing group shows a pK value of about 7.6. The maximal molar difference absorption coefficient at 290 nm is 3200 M-1cm-1 at pH 9, suggesting that tyrosine residues ionize under the conditions of modification of the enzyme. The results are discussed in the light of the known three-dimensional structure.

4-Hydroxybenzoate-3-Monooxygenase↗

Reinvestigation of the structure of oxidized and reduced flavin: carbon-13 and nitrogen-15 nuclear magnetic resonance study.

Several chemically substituted flavins are investigated in the oxidized and the reduced state by 13C and 15N NMR techniques. The dependence on the polarity of the solvent and on the concentration is studied. In combination with already published results, a semiempirical theory is developed to interpret the chemical shifts in terms of the solution structure of flavins. Where possible, the results are compared with crystallographic and light absorption data. In contrast to common ideas, the solution structure of the oxidized state is not fully coplanar, but the N(10) atom is situated out of plane to a certain degree. Polarizing the flavin by hydrogen bonds in a high dielectric medium moves the N(10) atom into the molecular plane, and the flavin molecule becomes coplanar. In the coplanar molecule, pi electrons are delocalized from the N(10) atom mainly to O(2 alpha) and O(4 alpha). The NMR results show that the solution structure of reduced flavin is mainly governed by sterical hindrance and hydrogen bonds. The findings are in contrast to commonly accepted ideas that reduced flavin is strongly bent. In an apolar solvent, the reduced neutral isoalloxazine is only slightly bent. The formation of hydrogen bonds in a protic solvent of a high dielectric constant decreases the bend. The N(10) atom is now almost fully sp2 hybridized, and the N(5) atom has an endocyclic angle of 115-117 degrees, indicating its predominant sp2 character. The results have several important implications for flavin catalysis.(ABSTRACT TRUNCATED AT 250 WORDS)

Flavins↗

Carbon-13 nuclear magnetic resonance study on the dynamics of the conformation of reduced flavin.

Several flavin model compounds in the reduced state have been investigated by 13C NMR techniques. The NMR spectra were recorded in dependence of temperature, in the range of 30 to -100 degrees C. The results show that the activation barrier for the ring inversion ("butterfly" motion) is too low to be observed directly. In order to be able to detect the barrier of the ring inversion, it was coupled with a side-chain rotation. In this way, the intrinsic barrier for the ring inversion is increased by the barrier of the side-chain rotation, which allowed detection of the former barrier. It is shown that the intrinsic barrier for the ring inversion is less than 20 kJ/mol. Moreover, it is shown that previous results of Tauscher et al. [Tauscher, L., Ghisla, S., & Hemmerich, P. (1973) Helv. Chim. Acta 56, 630-649] are incorrect and nitrogen inversion is not observed. Symmetry arguments in the dynamic processes are discussed. From the low activation barrier for the ring inversion, it can be concluded that the conformation of the reduced flavin can be easily influenced upon binding to apoflavoproteins. This aspect might be of importance in the regulation of the function of the flavin prosthetic group in biological systems.

Animals↗

Rapid relaxation processes in p-hydroxybenzoate hydroxylase from Pseudomonas fluorescens revealed by subnanosecond-resolved laser-induced fluorescence.

Time-resolved fluorescence studies were carried out on the FAD bound to p-hydroxybenzoate hydroxylase from Pseudomonas fluorescens. The transient fluorescence exhibits complex decay kinetics with at least a short lifetime component in the 50-500-ps time region and a longer one in the range 1.5-3.5 ns. The shorter-lifetime component has a larger contribution in the presence of substrate (p-hydroxybenzoate) or inhibitor (p-aminobenzoate). The quenching of the fluorescence is both static and dynamic in nature. The decay of fluorescence anisotropy shows that the FAD environment is both flexible and rigid. The FAD mobility can be enhanced by dilution of the enzyme, by raising the temperature, or by the binding of substrate or inhibitors. The anisotropy results are interpreted in part in terms of a monomer-dimer equilibrium, whereby the FAD in the monomer contains much more flexibility. The above-mentioned effects induce a shift of the equilibrium to the monomeric side. From a constrained parameter fitting the dissociation constant is estimated to be about 1 microM for the free enzyme and somewhat higher for the binary complexes between the enzyme and substrate or inhibitor. pH variation has only a slight effect on fluorescence or anisotropy decay parameters, while dimethylsulfoxide appears to promote dissociation into monomers by weakening hydrophobic interaction between the subunits. The results are discussed in the light of newly developed insights into the functional role of rapid structural fluctuations in enzyme catalysis.

4-Hydroxybenzoate-3-Monooxygenase↗

The use of two-dimensional nuclear-magnetic-resonance spectroscopy and two-dimensional difference spectra in the elucidation of the active center of Megasphaera elsdenii flavodoxin.

1H-1H 'through bond' correlated (COSY) and 1H-1H 'through space' (NOESY) two-dimensional NMR techniques were applied to study the structure of Megasphaera elsdenii flavodoxin in the oxidized and reduced state. It is shown that two-dimensional NOESY difference spectra between spectra of flavodoxin in the reduced and semiquinone state are sensitive to the active center of the fully reduced state. The sphere of the active center observed in the difference spectra can be varied easily by changing the relative amount of flavodoxin semiquinone in the second sample. The difference NOESY spectra simplified the analysis of the complex spectra. Resonances could be assigned to Ala-56, Tyr-89 and Trp-91, which are located in the direct vicinity of the protein-bound flavin. The relative positions and side-chain dihedral angles of these residues are compared for the two redox states. Ala-56 and Tyr-89 show identical relative positions and dihedral angles in the two redox states, although the rotational motion of Tyr-89 is enhanced in the oxidized state. In both redox states Trp-91 is immobilized and extremely close to the prosthetic group. However, a small displacement of Trp-91 towards the (N(5) atom of the flavin occurs upon reduction. The results obtained for Trp-91 are in excellent agreement with crystallographic results of the related flavodoxin from Clostridium MP. However, the latter studies showed a somewhat different position of the tyrosine residue compared with our results.

Amino Acids↗

On the intermolecular electron transfer between different redox states of flavodoxin from Megasphaera elsdenii. A 500-MHz 1H NMR study.

The electron transfer reactions between molecules of flavodoxin from Megasphaera elsdenii in different redox states have been investigated by proton nuclear magnetic resonance techniques at 500 MHz. The electron transfer between molecules in the oxidized and semiquinone state is shown to be at least 350-times slower than that between molecules in the semiquinone and hydroquinone state. The latter reaction was studied at different ionic strengths and temperatures. The rate of electron transfer increases with increasing ionic strength, as expected for a reaction between molecules of identical charges. The electron transfer reaction is only slightly dependent on temperature suggesting an outer sphere reaction mechanism. The results indicate that the activation energy for the electron transfer reaction between the semiquinone and hydroquinone state is negligible in contrast to that between the oxidized and semiquinone state. It is suggested that this feature renders M. elsdenii flavodoxin to an exclusive one-electron donor/acceptor in the cell, thereby shuttling between the semiquinone and the hydroquinone state. Mechanistic implications of the findings are briefly discussed.

Bacterial Proteins↗

A proton-nuclear-magnetic-resonance study at 500 MHz on Megasphaera elsdenii flavodoxin. A study on the stability, proton exchange and the assignment of some resonance lines.

1H NMR studies were performed on the three redox states of Megasphaera elsdenii flavodoxin. The results show that the protein is remarkably stable, as concluded from amide proton exchange studies. Some amide protons are still present in the 1H NMR spectrum even after one month in 2H2O at 33 degrees C (pH 8.3). The reactivity of the exchangeable protons can be grouped into three categories, i.e. t1/2 much greater than 5 min, 10 s approximately less than t1/2 approximately less than 5 min, and t1/2 much less than 10 s. The amide proton exchange reactions are hardly dependent on the redox state. Optimal resolution of 1H NMR spectra is obtained at 33 degrees C, independent of the redox state. No conformational change of the protein is observed in the pH range between 6 and 8.5. Assignments of resonances to protons of flavin and of some amino acid residues are established in both the oxidized and the hydroquinone state using chemically and isotopically substituted flavins and the driven nuclear Overhauser technique. Preliminary two-dimensional 1H-1H correlated spectra show that the protein is amenable to two-dimensional NMR techniques. Previous assignments are confirmed by this technique.

Amides↗

The importance of monopole-monopole and monopole-dipole interactions on the binding of NADPH and NADPH analogues to p-hydroxybenzoate hydroxylase from Pseudomonas fluorescens. Effects of pH and ionic strength.

NADPH binding to p-hydroxybenzoate hydroxylase from Pseudomonas fluorescens is found to be strongly dependent on pH and ionic strength. In the ionic strength range of 0.02-0.15 M, optimal NADPH binding is observed at a pH value of 6.4. Extrapolation of the dissociation constants to infinite ionic strength shows that under these conditions optimal binding occurs at pH values greater than 8. Similar results were obtained for complexes between the enzyme and two NADPH analogues in the presence or absence of the substrate. The experimental data can be explained by a theoretical model in which monopole-monopole or monopole-dipole interactions between the enzyme and the ligand are dominant. Changes in the former interaction prevail at low ionic strength and low pH values while the changes in the latter prevail at high ionic strength and high pH values. The dipole moment of the enzyme in the direction of the NADPH binding site was calculated from the ionic strength and pH dependence of the complex formation. The calculated dipole moment of the enzyme is about 2000 Debye at pH 6 and decreases to about 1100 Debye at pH 8.5. The results are discussed with respect to published results, including data obtained from the enzyme from a different source.

4-Hydroxybenzoate-3-Monooxygenase↗

Structural organization of the two main rDNA size classes of Ascaris lumbricoides.

The two main rDNA size classes in the genome of Ascaris lumbricoides consist of 8.8 kb and 8.4 kb long repeating units present in a quantitative ratio of roughly 10:1. They both contain the genes coding for 18 , 5.8S and 26S ribosomal RNAs. The length heterogeneity is due to a 450 bp long spacer region localized in the longer repeating unit which begins 870 bp upstream of the 5'-end 18S gene. A few additional microheterogeneities in base sequence occur at the 5'-end of the 26S gene. The 18S, 5.8S and 26S coding regions have been mapped on both the 8.8 kb and 8.4 kb repeating units and the localization of the 5'- and 3'-ends of the 18S and 26S genes has been performed by S1 protection. No intervening sequences are present in either coding region of the two main rDNA size classes.

Animals↗

Chromosomal arrangement of the two main rDNA size classes of Ascaris lumbricoides.

The two main rDNA size classes of 8.8 kb and 8.4 kb length from Ascaris lumbricoides, which comprise more than 95% of the total nuclear rDNA, are arranged as internally homogeneous clusters and are not intermingled with each other. The rRNA genes are present on a single autosomal locus as could be demonstrated by in situ hybridization of fluorochrome-labelled 18S and 26S rRNA to metaphase chromosomes of spermatocytes I. The quantitative ratio of the two rDNA size classes varies largely between individuals being on the average roughly 10:1 in the investigated wild population of A. lumbricoides. However, there are no differences in the hybridization pattern of the two rDNAs in the DNA eliminating nematode A. lumbricoides between germ line and somatic cells in any of the individuals that have been analyzed.

Animals↗

Nuclear-magnetic-resonance investigation of 15N-labeled flavins, free and bound to Megasphaera elsdenii apoflavodoxin.

Flavin derivatives, enriched with 15N (approximately equal to 95%) at the four nitrogen atoms of the isoalloxazine ring, have been investigated in the oxidized and the two-electron reduced state by the 15N nuclear magnetic resonance technique. The measurements were conducted with aqueous and chloroform solutions of flavin. A comparison of the chemical shifts of the N(1) and N(5) atoms of oxidized flavin in the two solvents revealed that these atoms are sensitive indicators for possible hydrogen-bridge formation to these atoms. The N(5) atom of oxidized flavin resonates at low field and shifts about 300 ppm upfield upon reduction. A pKa of 6.8 was determined from pH-dependent 15N NMR measurements of the two-electron reduced flavin molecule. In addition it is also shown that reduced flavin in aqueous solution possesses a more coplanar structure than in chloroform solution. The 15N chemical shifts of flavin bound to Megasphaera elsdenii apoflavodoxin indicate that various hydrogen bridges are formed between the prosthetic group and the apoprotein. Especially the N(1) atom of the prosthetic group in the oxidized state seems to form a strong hydrogen bond with the apoprotein. In the reduced state the prosthetic group is bound in the anionic form and possesses an almost coplanar structure. These results are in agreement with published crystallographic data on the related flavodoxin from Clostridium MP. Where possible 15N-1H, 15N-15N and 13C-15N coupling constants were determined. Some of the coupling constants are useful parameters for the elucidation of the planarity of free and protein-bound flavin and for the evaluation of the interaction between flavin and apoprotein. Spin-lattice relaxation measurements show that the relaxation of the 15N(3)H group of flavin is predominantly determined by dipole-dipole interaction. The calculated rotational correlation times of flavin in two different solvents were determined and are in good agreement with published results.

Apoproteins↗

The early development of the hypoglossal nerve and occipital somites in staged human embryos.

Serial sections of 105 human embryos (including 20 silver preparations) from stage 11 (24 days) to stage 22 (54 days) were studied, and 23 graphic reconstructions were prepared. The hypoglossal nucleus is evident at stage 12 and becomes isolated from other efferent nuclei at stage 14. The first hypoglossal nerve fibers appear at stage 12. The roots unite at stage 14 and the main trunk arrives in the tongue at stage 15. Four occipital somites can be identified during stage 13, and the sclerotomic material forms two bilateral masses. The fourth sclerotome separates in stage 14 and develops like a vertebra. This and the remaining sclerotomic material form the basioccipital and exoccipital parts of the chondrocranium , which are the first to appear. Four occipital myotomes develop and grow towards the tongue as the "hypoglossal cord", which arrives prior to the hypoglossal nerve. The developmental similarity in the hypoglossal region between birds and mammals, combined with experimental studies in birds, renders it extremely likely that the hypoglossal musculature in mammals also is derived from occipital somites. The present study is the first in which this conclusion is adequately supported in the human. This investigation aids in the interpretation and timing of origin of variations (e.g., bipartite hypoglossal canal) and anomalies (e.g., persistent hypoglossal artery).

Gestational Age↗

Computer ranking of the sequence of appearance of 100 features of the brain and related structures in staged human embryos during the first 5 weeks of development.

The sequence of events in the development of the brain in staged human embryos was investigated in much greater detail than in previous studies by listing 100 features in 165 embryos of the first 5 weeks. Using a computerized bubble-sort algorithm, individual embryos were ranked in ascending order of the features present. This procedure made feasible an appreciation of the slight variation found in the developmental features. The vast majority of features appeared during either one or two stages (about 2 or 3 days). In general, the soundness of the Carnegie system of embryonic staging was amply confirmed. The rhombencephalon was found to show increasing complexity around stage 13, and the postoptic portion of the diencephalon underwent considerable differentiation by stage 15. The need for similar investigations of other systems of the body is emphasized, and the importance of such studies in assessing the timing of congenital malformations and in clarifying syndromic clusters is suggested.

Brain↗

Embryonic length and cerebral landmarks in staged human embryos.

The greatest length (GL) and the crown-rump (C-R) length were compared in 43 staged human embryos. It was found that point C, which overlies the middle of the midbrain, was sometimes difficult to locate and that point R is not precise. These disadvantages render the C-R measurement unsatisfactory. At 4 weeks (stage 13) the GL comes to exceed the C-R and continues to do so until about 7 weeks (stages 17-19). The maximum difference is approximately 1.5 mm. Thereafter, the two lengths are basically equal and coincide from about stages 18 and 19 onward. In a series of 100 embryos of stages 19-23, female embryos at stages 21 and 22 were found to be shorter (by a mean of 1 mm) than male embryos, but not at stages 19, 20, and 23. The greatest length, which is independent of fixed points, is much simpler to measure than the C-R length, and it is recommended that it be used instead. It is pointed out that Streeter had already made that substitution. The greatest length has the further advantage of being a practicable measurement from two postovulatory weeks (stage 6) throughout the remainder of the embryonic and also in the fetal period. The lower limbs are excluded from measurement.

Anthropometry↗

Intervening sequences in the ribosomal RNA genes of Ascaris lumbricoides: DNA sequences at junctions and genomic organization.

An rDNA size class in the genome of the nematode Ascaris lumbricoides is described which is interrupted by a 4.5-kb long intervening sequence located in the 26S coding region. This molecular form occurs in approximately 15 copies per haploid genome and amounts to approximately 5% of the total nuclear rDNA. Intervening sequences are present only in the 8.8-kb rDNA, but not in the 8.4-kb rDNA repeating units of A. lumbricoides. Cloning of the interrupted rDNA units revealed, in addition to the main 4.5-kb insertion, shorter intervening sequences of 4-kb and 119-bp length. Both shorter rDNA forms are present in the single copy range of the haploid genome. Sequence analyses of the intervening sequence/rDNA junctions show an identical right-hand junction for all of the three different rDNA forms. The two shorter intervening sequences are a coterminal subset of the right-hand end of the main 4.5-kb insertion, whereas all three insertions have a different left-hand junction with the coding region of rDNA. Each intervening sequence is flanked by a short direct repeat of variable length, being only once present in the uninterrupted rDNA. The intervening sequences of A. lumbricoides show striking similarity to the organization of type I insertion family in dipteran flies, even though they are inserted at different positions in the 26S coding region. Additional rDNA intervening sequences may be present outside of the rDNA cluster, but in not more than 15-20 homologous copies per haploid genome.

Animals↗

Cerebral dysraphia (future anencephaly) in a human twin embryo at stage 13.

Cerebral dysraphia was studied histologically and by graphic reconstruction in a twin at stage 13, and comparisons were made with the normal (discordant) twin. The normal, bidirectional closure of the rostral neuropore was investigated in several embryos, from which it was concluded that the situs neuroporicus is represented by the future commissural plate rather than by the (adult) lamina terminalis. In the abnormal twin the neural tube was open over part of the midbrain and forebrain, although the situs neuroporicus was closed. The experimental production of anencephaly by Giroud and co-workers was reviewed, and comparisons between embryonic staging systems in the rat, mouse, and human were made. Three corresponding phases are found in the human: 1) cerebral dysraphia, occurring before or during Carnegie stage 11 (approximately 23-25 days); 2) exposure of a highly developing and well-differentiated brain during the remainder of the embryonic period; and 3) degeneration of the exposed brain throughout the fetal period, resulting in anencephaly. Hence the abnormal twin described here is believed to represent a precursor of typical anencephaly, and is the earliest example of purely cerebral dysraphia so far recorded.

Anencephaly↗

Pasteurella multocida septicemia not associated with primary liver disease.

Although systemic infections with Pasteurella multocida rarely occur in humans, liver cirrhosis associated with septicemia due to this organism has been frequently reported. Two cases of elderly women with Pasteurella multocida septicemia are described who had diabetes mellitus and breast cancer, respectively. Underlying diseases other than liver cirrhosis as well as factors hitherto unknown in otherwise healthy persons also enhance the risk of Pasteurella multocida septicemia.

Aged↗

L-5-hydroxytryptophan. Correlation between anticonvulsant effect and increases in levels of 5-hydroxyindoles in plasma and brain.

The effect of L-5-hydroxytryptophan (5-HTP) on the threshold for maximal electroconvulsions was compared with concomitant changes in levels of 5-HTP, 5-hydroxytryptamine (5-HT) and 5-hydroxyindoleacetic acid (5-HIAA) in plasma and brain of rats. A single injection of 5-HTP (100 mg/kg, i.p.) caused significant elevation in seizure threshold which was markedly intensified by pretreatment with the decarboxylase inhibitor carbidopa (10 mg/kg, i.p., 0.5 hr previously). Pretreatment with carbidopa also resulted in behavioural changes, i.e. the characteristic "wet-dog shake" behaviour became much more prominent. Biochemically, administration of 5-HTP gave rise to significant elevation of levels of 5-HTP, 5-HT and 5-HIAA in plasma and brain. Carbidopa increased levels of 5-HTP in the brain, decreased 5-HIAA in the periphery but did not alter the elimination rate of 5-HTP in plasma. In both naive rats and rats pretreated with carbidopa, a significant correlation was found between levels of 5-HTP and 5-HIAA in plasma and brain following injection of 5-HTP. Furthermore, in the absence of carbidopa, the increases of levels of 5-HT in plasma and brain induced by 5-HTP were correlated in a significant fashion. When the changes in the electroconvulsive threshold were compared with respective changes in levels of 5-hydroxyindoles, a significant correlation was obtained between threshold elevations and increases of 5-HTP and 5-HT in the brain. In rats treated with 5-HTP, without decarboxylase inhibitor, a significant correlation was found between increases in 5-HT in plasma and the seizure threshold. The results suggest that analysis of 5-hydroxyindoles in plasma may represent a useful tool for the estimation of 5-HT metabolism in brain.

5-Hydroxytryptophan↗