Search PubMedSearch

Biomedical subjects

F J Varela

Publications and source records attributed to F J Varela.

At least 19 recordsLinked to original sources

Color mixing in the pigeon (Columba livia) II: A psychophysical determination in the middle, short and near-UV wavelength range.

Pigeons were trained to discriminate between spectral lights and additive mixtures in the 350-560 nm spectral range using a successive "autoshaping" discrimination procedure [introduced in Palacios, Martinoya, Bloch & Varela, Vision Research, 30, 587-596 (1990)]. Dichromatic mixtures were found in the short and near UV region, but not in the middle-wave region. Our results suggest that color vision in the pigeon involves the active participation of five different primary mechanisms, which are differentially active in the yellow- and red-sensitive retinal fields.

Animals

Morphogenesis in shape-space. Elementary meta-dynamics in a model of the immune network.

A unique feature of the immune system is that it possesses meta-dynamics: the process governing the removal of certain clones from the active population and the recruitment of new clones from the pool of lymphocytes freshly produced by the bone marrow. In this paper, we present a computer model which focuses on those aspects of the system that characteristically derive from the meta-dynamics as such. We observe that when a region of shape-space is densely populated, there is an emergence of dynamically quasi-stable configurations. Moreover, when the system develops in the presence of permanent self-antigens, the latter are systematically incorporated into such coherent configurations. We conclude that the meta-dynamics of the biological immune system may be such that it gives rise to the emergence of a connected, self-sustaining network that we call the Central Immune System: a coherent self-identity which incorporates the molecules of the somatic self and, more generally, reflects the history of its own development.

Autoantigens

A frequency view of colour: measuring the human sensitivity to square-wave spectral power distributions.

We have measured the chromatic threshold sensitivity to stimuli with spectral composition determined by a periodic function of energy over wavelength. This approach is analogous to frequency studies of spatial vision for the study of colour. A device was constructed permitting the synthesis of illuminants over the entire visible range (400-700 nm) in which phase, frequency and amplitude can be independently controlled. We have used 12 frequencies of square-wave functions (from 0.5 to 3.6 cycles/300 nm) and seven values of phase (between 0 degrees and 180 degrees) to obtain the contrast sensitivity function of the chromatic system in three normal trichromats. The results show maximum sensitivity around 1.5 cycles/300 nm and a high-frequency cut-off at 3.6 cycles/300 nm. These empirical values are compared with the predictions obtained from three current psychophysical models of opponent-colour process.

Biophysical Phenomena

On mental rotations and cortical activity patterns. A linear representation is still wanted.

Carlton (1988) has proposed an attractive hypothesis to link perceived visual images to brain electrical patterns via a linear representation of the Euclidean group onto an appropriate functional space. We show that the construction she proposes is (1) biologically restrictive, and (2) cannot be completed in the desired way. We conclude by presenting other possible means to pursue Carlton's approach.

Depth Perception

Second generation immune networks.

Network approaches have had little impact on immunology because they have addressed the wrong questions. They have concentrated on the regulation of clonal immune responses rather than on the supraclonal properties of the immune system that emerge from its network organization, such as natural tolerance and memory. Theoretical advances, observations in unimmunized mice and humans, and the success of novel therapeutics in autoimmune diseases have recently promoted a new burst of research on the structure, temporal dynamics and metadynamical plasticity of immune networks.

Animals

[Psychophysical study of the chromatic discrimination in pigeons after lesions of thalamic nuclei Rotundus (RT) and Geniculatus Lateralis ventralis (GLv)].

The discrimination threshold at 510 and 640 nm has been measured before and after the bilateral lesion with kaïnic acid of two main thalamic structures: the nucleus rotundus (Rt) and the nucleus geniculatus lateralis ventralis (GLv). When the lesion destroys the GLv and the lower part of the Rt, thresholds increase followed by a progressive recuperation. In contrast, when the Rt lesion is complete, and whether the GLv is touched or not, the threshold increase is both higher and does not come down to the pre-operatory levels even after 15 post-operatory sessions.

Animals

Dynamics of a class of immune networks. I. Global stability of idiotype interactions.

This paper establishes the conditions under which a class of differential equations which appear in the study of immune systems (Varela et al., 1988a, In: Theoretical Immunology Part II. New Jersey: Addison Wesley), are globally stable. This is proved by adapting a Liapunov functional originally proposed by Cohen & Grossberg (1983, IEEE Transac SMC 13, 815-826) for competitive systems. The global stability thus obtained is valid on the fast time scale where only idiotypic interactions are relevant, thus excluding both lymphocyte proliferation processes and repertoire change via recruitment from immature bone marrow B cells.

Animals

Dynamics of a class of immune networks. II. Oscillatory activity of cellular and humoral components.

Simulations show that for a certain range of its free parameters, a model of the immune network including both cellular and humoral components is capable of self-sustained oscillations. The model also possesses a number of fixed points which appear to be unstable. These results, taken together, suggest the hypothesis that the immune network may be able to sustain a non-degenerate diversity of active clones which are actively connected to each other only on condition that the activities of these clones are oscillatory.

Animals

Color mixing in the pigeon. A psychophysical determination in the longwave spectral range.

Pigeons were trained to discriminate between spectral lights and additive mixtures in the 580-640 nm range. Two behavioral procedures were used: (I) a simultaneous instrumental discrimination and (II) successive "autoshaping" discrimination. Pigeons were able to make color mixture matches within this spectral range with satisfactory precision. Matchings determined by the animal correspond well to those predicted on the basis of the spectral sensitivities of two (or even three) pigment-droplet combinations present in the pigeon retina.

Animals

The relationship between connectivity and tolerance as revealed by computer simulation of the immune network: some lessons for an understanding of autoimmunity.

According to a classical, antigen-driven view of the immune system, autoimmunity is due to the presence of self-reactive lymphocyte clones which have not been eliminated. However, computer simulations of the immune network show that the greater the degree of connectivity of a clone, the greater its degree of tolerance to chronic antigenic stimulation. This tolerance does not correspond to an absence of response on the part of the system as a whole. On the contrary, stimulation by a 'tolerogenic antigen' results in widespread modification and overall activation of the whole network. This suggests that on an autopoietic network view of the immune system, autoimmunity arises not because of the presence of self-reactive clones, which is completely normal, but because such clones are inadequately connected to the network. This amounts to a complete reversal in perspective, whose significance for the clinical treatment of autoimmunity and the future of immunology is discussed.

Animals

Exploring the meaning of connectivity in the immune network.

It is suggested that the immune network possesses a distinct internal structure, such that B-lymphocyte clones fall into four categories: 1) A multi-affinity or "sticker" group A, containing all the immunoglobulins with auto-affinity, and generally having affinity for nearly all the other immunoglobulins; 2) and 3) Two "mirror" groups B and C, characterized by the fact that there is virtually no within-group affinity; the affinities between B and C can be arranged co-linearly so that a clone from group B has affinity with its opposite number(s) in group C; 4) A fourth group of low affinity, each clone having affinity only with clones from group A. Computer simulations show that this way of analyzing the connectivity of the network makes sense (a) in relation to the stereochemical origins of affinity; and (b) in relation to the dynamical behavior of the clones in a functioning network.

Animals

Frontal and lateral visual system in birds. Frontal and lateral gaze.

Birds exhibit a variable retinal organization in terms of foveas and areas of high cell density. The distribution of these retinal structures in different species does not follow phylogenetic lines. In order to study this phenomenon, we presented chickens and pigeons with a luminous bar that could be moved at different speeds and directions in the visual field and could be located at various distances from the animal; head movements were monitored during the presentations. The results show that for a static or slow-moving stimulus the birds adopted a frontal gaze that stabilized the image in the retina, and for a fast-moving stimulus they adopted a lateral gaze that allowed the image to move across the retina. These results reveal that: (a) these two ways of looking correlate with the retinal anatomy, not with the phylogeny, of the species, and (b) these two ways of looking reflect two different sensorimotor systems that involve different anatomical features and neurophysiological properties of the visual system in birds.

Animals

Cytoarchitecture of the avian ventral lateral geniculate nucleus.

The avian thalamic ventral lateral geniculate nucleus (GLv) was studied by light microscopic techniques in order to understand its anatomy, neuronal composition, and the nature of its retinal and tectal afferents. The avian GLv is of considerable interest because physiological experiments show that it is the brain structure with the highest percentage of color-opponent responses (Maturana and Varela, '82). We used adult pigeons and quail for the present study. With Nissl techniques a predominance of medium-size neurons (58%) constitute the GLv. The shape, size, and orientation of the different neurons is highly variable throughout the GLv. With the Golgi methods, 5 classes of neurons are distinguished: I and IV (large), II (medium-size), III and V (small). Some class IV large neurons have bifurcated axons; no axons were distinguished on the small neurons. Optic fibers penetrating the GLv are often collateral branches of retinal axons that continue elsewhere. Fink-Heimer methods show that retinal axon terminals end around large and medium-size neurons and also reach the internal lamina of the GLv. HRP tracing shows that the large and medium-size neurons of the GLv project to the optic tectum. On the basis of comparisons between the cytoarchitecture of the GLv described here and the physiological findings previously reported (Maturana and Varela, '82; Pateromichelakis, '79), we suggest that: (1) large GLv neurons are the color-opponent units, (2) medium-size neurons are the movement-sensitive units, and (3) small neurons are either interneurons (local circuit neurons), or they might project to the area pretectalis or to some other GLv projection region not yet described.

Animals

Neuronal dynamics in the visual corticothalamic pathway revealed through binocular rivalry.

Single unit activity was recorded from principal cells in the A-laminae of the cat dorsal lateral geniculate nucleus (dLGN). A steady state pattern of afferent activation was induced by presenting a continuously drifting square wave grating of constant spatial frequency to the eye (the dominant eye) that provided the excitatory input to the recorded cell. Intermittently, a second grating stimulus was presented to the other, nondominant, eye. In most neurones nondominant eye stimulation led to inhibition of relay cell responses. The latency of this suppressive effect was unusually long (up to 1 s) and its intensity and duration depended critically on the similarity between the gratings that were presented to the two eyes. Typically suppression was strongest when the gratings differed in orientation, direction of movement and contrast and when the nondominant eye stimulus was moving rather than stationary. Ablation of visual cortex abolished these long latency and feature-dependent interferences. We conclude that the visual cortex and the corticothalamic projections are involved in the mediation of these interocular interactions. We interpret our results as support for the hypothesis that corticothalamic feedback modifies thalamic transmission as a function of the congruency between ongoing cortical activation patterns and afferent retinal signals.

Animals

Exact results for the average dynamic behavior of some non-linear neural networks.

We have studied the global dynamic behavior of neural-like networks of synchronous threshold elements by writing a master equation as a function of parameter values using statistical methods. Exact results for highly connected networks and no correlation are obtained, showing that in this case (contrary to previous results) the average activity can only display simple stable behaviour, the sole exception being special cases of a slow passage through a tangent bifurcation, and a limit cycle of length two. By introducing an appropriate probabilistic hypothesis, we also study the average activity and correlation for highly connected networks with the topology of a (Cayley) tree. In this case the dynamic is ruled by a pair of coupled equations linking activity and correlation, and the tendency is for the correlation to disappear over time. However, under reasonable biological conditions, this tendency will be extremely slow, giving rise to a region of pseudo-stability.

Animals

Regional specialization of the quail retina: ganglion cell density and oil droplet distribution.

The ganglion cell density of the quail's retina was studied in sections and whole mounts. Two regions of high ganglion cell density were found, corresponding to an afoveate area centralis and an area dorsalis. Oil droplets were found to be isotropically distributed throughout the retina. It is proposed that the significance of such retinal regional specialization, in comparison to similar studies in the pigeon and the chick, is that regional specialization in the avian retina is more closely related to feeding habits than to phylogenetic descendence.

Animals

Color-opponent responses in the avian lateral geniculate: a study in the quail (Coturnix coturnix japonica).

Extracellular recordings were made from cells in the ventral lateral geniculate (GLv) of the Japanese quail (Coturnix coturnix japonica), and their responses studied with chromatic stimuli. A total of 156 units were studied, and of these, 124 were found to be optimally responsive to changes in hue, and not to changes of contrast or motion of the stimuli in their receptive fields. These chromatic responses can be characterized as follows: (1) they have large (average 15 degrees x 15 degrees) receptive fields; (2) these receptive fields are mostly located in the anterior part of the visual field; (3) the receptive fields are organized in a (rough) retinotopy in agreement with anatomical findings; (4) units exhibit a sustained response in the dark or under white illumination, which is strongly modulated by changes in hue of stimuli of equal illuminance; (4) the units have a complementary inhibitory response, thus exhibiting a color-opponent pattern of responses; (5) the inhibitory and excitatory areas of the receptive fields are uniform and superimposed; (6) there is a tendency of units of the same optimal chromatic responses to be clustered together in the Glv; (7) although units of all preference are found, the population is dominated by units with preferences in the short wavelength end of the spectrum (48%). This is the first report of a region in the avian brain where color-opponent responses are found in significant numbers, thus making it apparent that the difficulty of finding similar units in the optic tract, tectum, dorsal geniculate, or telencephalon, is not due to a lack of appropriate retinal afferents. The relationship between the present findings and other reports on the Glv's anatomy and physiology are discussed, as well as its possible roles in the generation of chromatic behavioral discrimination of birds.

Animals