Mitochondrial DNA and population size.
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Animals↗
Biomedical subjects
Erik E Sotka
Publications and source records attributed to Erik E Sotka.
The use of genetic clines to estimate dispersal distances of marine larvae.
Many unresolved issues in the ecology and evolution of marine populations center on how far planktonic larvae disperse away from their parents. Genetic tools provide a promising way to define the spatial spread of larvae, yet their accurate interpretation depends on the extent to which genetic loci are under selection. Genetic clines, geographic zones in which genetically differentiated populations interbreed, provide opportunities to explicitly and simultaneously quantify the relative roles of selection and dispersal. Here, we review the theory and analysis of genetic clines and apply these techniques to published studies of multilocus clines in the sea. The geographic width of a stable genetic cline is determined by a balance between the homogenizing effects of dispersal and the diversifying effects of selection. For marine researchers, the power of genetic clines is that, if selection and clinal width are quantified, then the average geographic distances that larvae move can be inferred. Measuring selection or dispersal through laboratory or field-based experimentation is possible, though logistically difficult, for pelagically dispersed organisms. Instead, dispersal may be more robustly quantified from the degree of linkage disequilibrium between two or more loci, because linkage disequilibrium integrates selection across multiple life stages and generations. It is also relatively insensitive to whether exogenous or endogenous selection operates. Even without quantifying linkage disequilibrium, the theory of genetic clines indicates that the average dispersal distance of larvae is a fraction (i.e., generally <35%) of the clinal width. Because cline theory is based on several underlying assumptions, including near-equilibrium between selection and migration, the dispersal distances inferred from empirical data should be of the correct order but may not be precise. Even so, such estimates of larval dispersal are valuable, as they can be utilized to design appropriate scales for future investigations and provide some guidance to conservation efforts.
Animal Migration↗
Genetic evidence of postglacial population expansion in Puget Sound rockfish (Sebastes emphaeus).
Several rockfish species (genus Sebastes) along the northeastern Pacific Ocean have rapidly declined in abundance owing in part to overfishing. A striking exception is the dwarf-like Puget Sound rockfish Sebastes emphaeus, whose densities have increased by several orders of magnitude over the last several decades. To describe their genetic structure, we sequenced 395 bp from the mitochondrial control region of 128 S. emphaeus adults from 5 locations spanning approximately 120 km of the Northwest Straits of Washington state. We detected no significant genetic differentiation among these populations and substantial genetic variation within populations, a pattern that may indicate high levels of ongoing gene flow. Preliminary data from 2 microsatellite loci are also consistent with panmixia. The mtDNA sequences also suggest that Puget Sound rockfish populations have expanded substantially since the retreat of Pleistocene glaciers made habitat in Puget Sound region available approximately 12,000 years ago.
Animals↗
Do some corals like it hot?
Global increases in sea temperatures threaten coral reef resilience because thermal stress can cause corals to bleach; that is, to lose their photosynthetic microalgal symbionts. Recent evidence suggests that some corals associate with genotypes of microalgae that resist future thermal stress, however, these genotypes might provide less energy for growth when thermal stresses are curtailed. Coral reef resilience depends on whether phenotypic and genotypic changes in host-symbiont associations can match projected increases in the frequency and severity of thermal stress, as well as on our ability to ameliorate continuing human impacts.
Journal Article↗
Strong genetic clines and geographical variation in gene flow in the rocky intertidal barnacle Balanus glandula.
A long-standing issue in marine biology is identifying spatial scales at which populations of sessile adults are connected by planktonic offspring. We examined the genetic continuity of the acorn barnacle Balanus glandula, an abundant member of rocky intertidal communities of the northeastern Pacific Ocean, and compared these genetic patterns to the nearshore oceanography described by trajectories of surface drifters. Consistent with its broad dispersal potential, barnacle populations are genetically similar at both mitochondrial (cytochrome oxidase I) and nuclear (elongation factor 1-alpha) loci across broad swaths of the species' range. In central California, however, there is a striking genetic cline across 475 km of coastline between northern and southern populations. These patterns indicate that gene flow within central California is far more restricted spatially than among other populations. Possible reasons for the steep cline include the slow secondary introgression of historically separated populations, a balance between diversifying selection and dispersal, or some mix of both. Geographic trajectories of oceanic drifters closely parallel geographical patterns of gene flow. Drifters placed to the north (Oregon; approximately 44 degrees N) and south (Santa Barbara, California; approximately 34 degrees N) of the cline disperse hundreds of kilometers within 40 days, yet over the long-term their trajectories never overlapped. The lack of communication between waters originating in Oregon and southern California probably helps to maintain strong genetic differentiation between these regions. More broadly, the geographical variation in gene flow implies that focusing on species-level averages of gene flow can mask biologically important variance within species which reflects local environmental conditions and historical events.
Animals↗
Geographic and genetic variation in feeding preference for chemically defended seaweeds.
Genetic variation in tolerance for seaweed chemical defenses among populations of marine herbivores is poorly described, either because few marine studies have addressed the issue or because the feeding preferences of populations of marine herbivores rarely differentiate. We address this using the polyphagous amphipod Ampithoe longimana (Crustacea), which commonly consumes, and lives on, terpene-rich brown seaweeds in the tropical genus Dictyota. Previous work demonstrated that in areas where the amphipod and seaweeds overlap geographically, these chemically deterrent seaweeds provide the amphipod with spatial refuges from predation by omnivorous fishes that avoid consuming Dictyota. However, the amphipod's distribution extends northward of the seaweed's distribution, making this benefit of association unavailable to more northerly populations of amphipods. On average, populations sympatric with Dictyota have stronger feeding preference for Dictyota species and greater fitness when raised on Dictyota than do populations that are outside Dictyota's geographic endpoint. These results are consistent with the hypothesis that in areas where the amphipods co-exist with Dictyota, selection favors amphipods that tolerate Dictyota's chemical defenses and thereby access its enemy-free space. Amphipods allopatric with Dictyota are unable to tolerate Dictyota's chemical defenses, either because of selection, drift, or some mix of both forces. A trade-off between preference for Dictyota and for the chemically distinct seaweed Hypnea musciformis is suggested by the finding that populations with high preference for Dictyota tended to have lower preference for Hypnea. However, this population-level pattern appears to be the result of independent evolution and not a genetic trade-off: an analysis of full-sib families within a single population detected heritable variation in preferences for Dictyota and suggested this for Hypnea (although the latter was not statistically significant), yet no family-level covariation was detected. Phylogeographic analysis of mitocondrial DNA and nuclear sequences indicates a strong historical break between populations sympatric with Dictyota and populations more than 500 km beyond Dictyota's geographic endpoint. The historical separation of these most northerly populations could have allowed a random accumulation of alleles to effectively degrade tolerance for Dictyota, although selection may also be responsible for the degradation.
Amphipoda↗