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Biomedical subjects

D P Chakraborty

Publications and source records attributed to D P Chakraborty.

At least 19 recordsLinked to original sources

A search model and figure of merit for observer data acquired according to the free-response paradigm.

Search is a basic activity that is performed routinely in many different tasks. In the context of medical imaging it involves locating lesions in images under conditions of uncertainty regarding the number and locations of lesions that may be present. A search model is presented that applies to situations, as in the free-response paradigm, where on each image the number of normal regions that could be mistaken for lesions is unknown, and the number of observer generated localizations of suspicious regions (marks) is unpredictable. The search model is based on a two-stage model that has been proposed in the literature, according to which, at the first stage (the preattentive stage) the observer uses mainly peripheral vision to identify likely lesion candidates, and at the second stage the observer decides (i.e., cognitively evaluates) whether or not to report the candidates. The search model regards the unpredictable numbers of lesion and non-lesion localizations as random variables and models them via appropriate statistical distributions. The model has three parameters quantifying the lesion signal-to-noise ratio, the observer's expertise at rejecting non-lesion locations, and the observer's expertise at finding lesions. A figure-of-merit quantifying the observer's search performance is described. The search model bears a close resemblance to the initial detection and candidate analysis (IDCA) model that has been recently proposed for analysing computer aided detection (CAD) algorithms. The ability to analytically model and quantify the search process would enable more powerful assessment and optimization of performance in these activities, which could be highly significant.

Algorithms↗

ROC curves predicted by a model of visual search.

In imaging tasks where the observer is uncertain whether lesions are present, and where they could be present, the image is searched for lesions. In the free-response paradigm, which closely reflects this task, the observer provides data in the form of a variable number of mark-rating pairs per image. In a companion paper a statistical model of visual search has been proposed that has parameters characterizing the perceived lesion signal-to-noise ratio, the ability of the observer to avoid marking non-lesion locations, and the ability of the observer to find lesions. The aim of this work is to relate the search model parameters to receiver operating characteristic (ROC) curves that would result if the observer reported the rating of the most suspicious finding on an image as the overall rating. Also presented are the probability density functions (pdfs) of the underlying latent decision variables corresponding to the highest rating for normal and abnormal images. The search-model-predicted ROC curves are 'proper' in the sense of never crossing the chance diagonal and the slope is monotonically changing. They also have the interesting property of not allowing the observer to move the operating point continuously from the origin to (1, 1). For certain choices of parameters the operating points are predicted to be clustered near the initial steep region of the curve, as has been observed by other investigators. The pdfs are non-Gaussians, markedly so for the abnormal images and for certain choices of parameter values, and provide an explanation for the well-known observation that experimental ROC data generally imply a wider pdf for abnormal images than for normal images. Some features of search-model-predicted ROC curves and pdfs resemble those predicted by the contaminated binormal model, but there are significant differences. The search model appears to provide physical explanations for several aspects of experimental ROC curves.

Algorithms↗

Breast tissue density quantification via digitized mammograms.

Studies reported in the literature indicate that breast cancer risk is associated with mammographic densities. An objective, repeatable, and a quantitative measure of risk derived from mammographic densities will be of considerable use in recommending alternative screening paradigms and/or preventive measures. However, image processing efforts toward this goal seem to be sparse in the literature, and automatic and efficient methods do not seem to exist. In this paper, we describe and validate an automatic and reproducible method to segment dense tissue regions from fat within breasts from digitized mammograms using scale-based fuzzy connectivity methods. Different measures for characterizing mammographic density are computed from the segmented regions and their robustness in terms of their linear correlation across two different projections--cranio-caudal and medio-lateral-oblique--are studied. The accuracy of the method is studied by computing the area of mismatch of segmented dense regions using the proposed method and using manual outlining. A comparison between the mammographic density parameter taking into account the original intensities and that just considering the segmented area indicates that the former may have some advantages over the latter.

Algorithms↗

The effect of the antiscatter grid on full-field digital mammography phantom images.

Computer Analysis of Mammography Phantom Images (CAMPI) is a method for making quantitative measurements of image quality. This article reports on a recent application of this method to a prototype full-field digital mammography (FFDM) machine. Images of a modified ACR phantom were acquired on the General Electric Diagnostic Molybdenum Rhodium (GE-DMR) FFDM machine at a number of x-ray techniques, both with and without the scatter reduction grid. The techniques were chosen so that one had sets of grid and non-grid images with matched doses (200 mrads) and matched gray-scale values (1500). A third set was acquired at constant 26 kVp and varying mAs for both grid conditions. Analyses of the images yielded signal-to-noise-ratio (SNR), contrast and noise corresponding to each target object, and a non-uniformity measure. The results showed that under conditions of equal gray-scale value the grid images were markedly superior, albeit at higher doses than the non-grid images. Under constant dose conditions, the non-grid images were slightly superior in SNR (7%) but markedly less uniform (60%). Overall, the grid images had substantially greater contrast and superior image uniformity. These conclusions applied to the whole kVp range studied for the Mo-Mo target filter combination and 4 cm of breast equivalent material of average composition. These results suggest that use of the non-grid technique in digital mammography with the GE-DMR-FFDM unit, is presently not warranted. With improved uniformity correction procedure, this conclusion would change and one should be able to realize a 14% reduction in patient dose at the same SNR by using a non-grid technique.

Artifacts↗

Renal cyst pseudoenhancement: beam-hardening effects on CT numbers.

PURPOSE: To determine if simple renal cysts may be accurately characterized with helical computed tomography (CT) during peak levels of renal enhancement. MATERIALS AND METHODS: Water-filled "cysts" were suspended in varying concentrations of iodine solution, meant to simulate varying levels of renal enhancement, within an abdominal phantom. Volume-averaging effects were minimized by scanning cylindric 5-30-mm cysts with a helical technique (collimation, 5 mm; pitch, 1:1). Axial and helical techniques were then compared, and volume-averaging effects were evaluated by scanning 10- and 20-mm round cysts with 3-, 5-, and 7-mm collimation at background attenuation levels of 100 and 200 HU. RESULTS: Cylindric cyst attenuation increased consistently with increasing background attenuation. As background attenuation increased by 90 HU, attenuation increased by 11-17 HU in small (5- or 10-mm) cysts, and by 7-9 HU in large (15-30-mm) cysts. As background attenuation increased by 180 HU, attenuation increased by 18-28 HU in small cysts and by 10-15 HU in large cysts. Spherical cyst attenuation differences were maximized when smaller cysts were imaged with larger collimation, which is when volume-averaging effects became apparent. Axial and helical CT numbers did not differ substantially. Computer simulation studies showed that the observed effect could not be explained by beam hardening alone. CONCLUSION: Pseudoenhancement of renal cysts may occur if helical CT is performed during peak renal enhancement. CT algorithm modification may be necessary to correct for this effect, which is likely related to an inadequate algorithmic correction for beam hardening.

Kidney Diseases, Cystic↗

Computer analysis of mammography phantom images (CAMPI): an application to the measurement of microcalcification image quality of directly acquired digital images.

The purpose of this investigation was to apply the recently developed CAMPI (computer analysis of mammography phantom images) method to a Fischer Mammotest Stereotactic Digital Biopsy machine. Another aim was to further elucidate the nature of the empirically introduced CAMPI measures. Images of an American College of Radiology (ACR) accreditation phantom centered on the largest two speck groups were obtained on this machine under a variety of x-ray conditions. An additional measure, alternative SNR (ASNR) is introduced which is complementary to the SNR measure. Analyses of the Mammotest images revealed that the mAs and kVp dependencies of the CAMPI measures could be understood from basic imaging physics principles. It is shown that: (1) the measures reflect the expected linearity of the digital detector and Poisson photon statistics; (2) under automatic exposure control (AEC) conditions the signal (SIG) measure is proportional to subject contrast; and (3) under AEC conditions the noise (NOI) measure is proportional to the square root of the average absorbed photon energy. Correspondence with basic imaging physics principles shows that the measures are significantly free of artifacts. Precision of the CAMPI measures exceeds that of human observers by orders of magnitude. CAMPI measures are expected to be more relevant to clinical mammography than Fourier metrics as the measurements are done on objects of arbitrary shape and size that were designed by the manufacturer to resemble various detection tasks in mammography. It is concluded that CAMPI can perform objective and highly precise evaluations of phantom image quality in mammography. It could be used as a sophisticated quality control tool, as a replacement for the current ACR/MQSA phantom evaluation program, and to evaluate the rapidly evolving digital mammography technology.

Biophysical Phenomena↗

Vitiligo, psoralen, and melanogenesis: some observations and understanding.

Since the etiology of vitiligo is still unknown, we searched for some abnormal biochemical parameters, if any, in subjects with vitiligo. Higher urinary excretion of indole metabolites in vitiliginous patients have been noted, in association with higher dioxygenase, superoxide dismutase, and tyrosine aminotransferase activity in their serum. Similar results have also been found in an animal model, Bufo melanostictus, during induced tyrosinase inhibition. Treatment with psoralen can reverse the parameters, except tyrosine aminotransferase, to a normal level. Although psoralens are not the magic bullet for the therapy of vitiligo, they are still being used as a chemotherapeutic agent against vitiligo on a major scale to date. Tryptophan was found to participate in the pathway of melanogenesis, as a precursor as well as a positive regulator of tyrosinase. Its behavior in this regard is much more similar to the conventional substrates tyrosine and dopa (dihydroxyphenylalanine). In consideration of combined participation of tyrosine and tryptophan in the synthesis of melanin and its breakdown, the possible influence of different enzymatic reactions, like mono-oxygenase, dioxygenase, and deamination, has been suggested.

Animals↗

A ROC study of AMBER and conventional chest imaging in the detection of simulated interstitial lung disease.

PURPOSE: The aim of this study was to compare the detection of simulated interstitial lung disease with Advanced Multiple Beam Equalization Radiography (AMBER) and conventional wide latitude screen-film radiography. MATERIALS AND METHODS: Interstitial disease of varying severity was simulated with overlays on an anthropomorphic chest phantom. A total of 60 images per modality was used in a Receiver Operating Characteristic (ROC) study. RESULTS: AMBER performed significantly better than conventional radiography for all readers (P < 0.02). The difference was even more significant for the radiologist readers (P = 0.001). In each case the difference in ROC areas was between 5% and 9%. CONCLUSION: AMBER is superior to conventional wide latitude screen-film imaging in detecting the subtle patterns used to simulate interstitial lung disease.

Humans↗

Quantitative versus subjective evaluation of mammography accreditation phantom images.

The precision of quantitative and subjective evaluations of phantom image quality has been studied. Twenty-seven images of the American College of Radiology (ACR) mammography accreditation phantom were acquired under different x-ray techniques and digitized. Several quantitative image quality measures were obtained from each image by analyzing microcalcification and nodule target objects in the phantom. All images were also scored subjectively by 8 observers, each of whom provided a count of the number of objects seen in each target class (fibrils, microcalcifications, and nodules). An analysis was performed to predict the subjective measurements from the quantitative measurements and to estimate their variabilities. It was found that the subjective measures could be well predicted by the quantitative measures and that the variance of the quantitative measures was significantly smaller than that of the subjective measure, by almost a factor of 10. The implication for the ACR accreditation program for mammography is that a substantial improvement is possible in the image quality evaluation process by performing computerized analysis of the phantom images in addition to subjective analysis.

Accreditation↗

The effect of tryptophan on dopa-oxidation by melanosomal tyrosinase.

1. Tryptophan has been shown to inhibit dopa-oxidation by melanosomal tyrosinase. 2. The inhibition is of mixed-type with Ki = 1.6 x 10(-3) M. 3. Tryptophan does not interact with the oxidation product of the dopa-oxidase reaction. 4. Neither oxygen nor hydroxyl radicals are involved in the inhibition found in presence of tryptophan. 5. Tryptophan, like dopa, also inhibits tyrosine hydroxylase and dopa-oxidase activity of melanosomal tyrosinase and its inhibitory mechanism differs from inhibition due to non-substrate type compounds like cysteine, ascorbic acid. 6. These experiments together with previous findings suggest that the status of tryptophan may be similar to that of dopa in relation to regulation of melanogenesis.

Animals↗

Hydroquinone simultaneously induces indole amine 2,3 dioxygenase (IOD) and inhibits tyrosinase in Bufo melanostictus.

Hydroquinone administration in Bufo melanostictus causes an induction of indole amine 2,3-dioxygenase in skin and liver while simultaneously inhibiting tyrosinase in these organs. The result is discussed with the reports of higher urinary excretion of abnormal indole metabolites including derivatives of anthranilic acid in vitiliginous subjects (Roychoudhury and Chakraborty, Clinica. Chim. Acta 22, 298, 1968; Kurbanov and Berezov, Vopr. Med. Khim. 22, 683, 1976).

Animals↗

Free-response methodology: alternate analysis and a new observer-performance experiment.

The authors review the recently introduced method for analyzing free-response receiver operating characteristic (FROC) observer-performance experiments. These experiments allow multiple abnormalities and observer responses per image and require correct localization for true-positive events. A fundamental plot, the alternative FROC (AFROC), is emphasized, the area under which is a natural index of performance for measuring FROC observer performance. The authors show that it is possible to analyze free-response data in more general ways. The first method, AFROC analysis, involves scoring FROC images in a different way. The second method involves a new observer-performance experiment, the free-response forced error (FFE) experiment. FROC and AFROC analysis was applied to several FROC data sets, and simultaneous FROC-AFROC-FFE experiments were performed with several radiologist observers to test the three methods. The methods were found to be in good agreement with one another.

Humans↗

The digital imaging workstation.

Picture archiving and communication systems (PACS) are expected to convert film-based radiology into a computer-based digital environment, with associated cost savings and improved physician communication. The digital workstation will be used by physicians to display these "soft-copy" images; however, difficult technical challenges must be met for the workstation to compete successfully with the familiar viewbox. Issues relating to image perception and the impact on physicians' practice must be carefully considered. The spatial and contrast resolutions required vary according to imaging modality, type of procedure, and class of user. Rule-based software allows simple physician interaction and speeds image display. A consensus appears to be emerging concerning the requirements for the PACS workstation. Standards such as the American College of Radiology/National Electrical Manufacturers' Association Digital Imaging and Communication Standard are facilitating commercial applications. Yet much careful study is needed before PACS workstations will be fully integrated into radiology departments.

Computer Systems↗