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Biomedical subjects

D B Dusenbery

Publications and source records attributed to D B Dusenbery.

At least 19 recordsLinked to original sources

Selection for high gamete encounter rates explains the success of male and female mating types.

Sexual reproduction occurs in many small eukaryotes by fusion of similar gametes (isogamy). In the absence of distinguishable sperm and eggs, male and female mating types are missing. However, species with distinct males and females have so prospered that almost all familiar plants and animals have these mating types. Why has sexual reproduction involving sperm and eggs been so successful? An answer is obtained by considering physical limitations on encounter rates between gametes. A biophysical model based on well-established relationships produces fitness landscapes for the evolution of gamete size and energy allocation between motility and pheromone production. These landscapes demonstrate that selection for high gamete encounter rates favors large, pheromone-producing eggs and small, motile sperm. Thus, broadcast-spawning populations with males and females can reproduce at lower population densities and survive under conditions where populations lacking males and females go extinct. It appears that physical constraints on gamete encounter rates are sufficient to explain the first two steps in the isogamy-->anisogamy-->oogamy-->internal fertilization evolutionary sequence observed in several lineages of the eukaryotes. Unlike previous models, assumptions concerning zygote fitness or decreasing speed of swimming with increasing gamete size are not required.

Animals↗

Comparison of lethality, reproduction, and behavior as toxicological endpoints in the nematode Caenorhabditis elegans.

This study describes a new approach for assessing behavioral changes following toxicant exposure and compares the method to other common endpoints used in environmental toxicology. The nematode Caenorhabditis elegans was exposed to a range of ethanol concentrations to determine its effect on survival, reproduction and behavior. Each endpoint was evaluated for its sensitivity by comparing LC50, RC50 (concentration at which there is a 50% reduction in number of offspring as compared to controls), and BC50 (concentration at which there is a 50% reduction in movement as compared to controls) values for ethanol exposure. Worms showed 24-h lethality at concentrations of ethanol in the range of 83 g/L to 99 g/L. Reproduction in C. elegans was estimated by counting the number of off-spring after 3 d of exposure, which decreased with the increase in ethanol concentration from 8 g/L to 71 g/L. Behavior was quantified by using a new computer tracking method, which can simultaneously assess hundreds of nematodes and provides several behavioral parameters in real time. Worms showed some hyperactivity (increased movement) at very low ethanol concentrations (0.8 g/L and 2.4 g/L) and a decrease in movement at higher ethanol concentrations (4 g/L to 40 g/L). A comparison for sensitivity between the three endpoints was performed. Behavior and reproduction responses were found to be similar and, as expected, both are much more sensitive indicators of toxicity than lethality. The advantages and disadvantages of the computer tracking system are discussed.

Animals↗

Evolution flies.

Explore the source record for details and available documents.

Animals↗

Spatial sensing of stimulus gradients can be superior to temporal sensing for free-swimming bacteria.

Predictions of the minimal size an organism must have to swim along stimulus gradients were used to compare the relative advantages of sensory systems employing spatial (simultaneous) and temporal (sequential) gradient detection mechanisms for small free-swimming bacteria, leading to the following conclusions: 1) there are environmental conditions where spatial detection mechanisms can function for smaller organisms than can temporal mechanisms, 2) temporal mechanisms are superior (have a smaller size limit) for the difficult conditions of low concentration and shallow gradients, but 3) observed bacterial chemotaxis occurs mostly under conditions where spatial mechanisms have a smaller size limit, and 4) relevant conditions in the natural environment favor temporal mechanisms in some cases and spatial mechanisms in others. Thus, sensory ecology considerations do not preclude free-swimming bacteria from employing spatial detection mechanisms, as has been thought, and microbiologists should be on the lookout for them. If spatial mechanisms do not occur, the explanation should be sought elsewhere.

Bacterial Physiological Phenomena↗

Fitness landscapes for effects of shape on chemotaxis and other behaviors of bacteria.

Data on the shapes of 218 genera of free-floating or free-swimming bacteria reveal groupings around spherical shapes and around rod-like shapes of axial ratio about 3. Motile genera are less likely to be spherical and have larger axial ratios than nonmotile genera. The effects of shape on seven possible components of biological fitness were determined, and actual fitness landscapes in phenotype space are presented. Ellipsoidal shapes were used as models, since their hydrodynamic drag coefficients can be rigorously calculated in the world of low Reynolds number, where bacteria live. Comparing various shapes of the same volume, and assuming that departures from spherical have a cost that varies with the minimum radius of curvature, led to the following conclusions. Spherical shapes have the largest random dispersal by Brownian motion. Increased surface area occurs in oblate ellipsoids (disk-like), which rarely occur. Elongation into prolate ellipsoids (rod-like) reduces sinking speed, and this may explain why some nonmotile genera are rod-like. Elongation also favors swimming efficiency (to a limited extent) and the ability to detect stimulus gradients by any of three mechanisms. By far the largest effect (several hundred-fold) is on temporal detection of stimulus gradients, and this explains why rod-like shapes and this mechanism of chemotaxis are common.

Bacterial Physiological Phenomena↗

Minimum size limit for useful locomotion by free-swimming microbes.

Formulas are derived for the effect of size on a free-swimming microbe's ability to follow chemical, light, or temperature stimuli or to disperse in random directions. The four main assumptions are as follows: (i) the organisms can be modeled as spheres, (ii) the power available to the organism for swimming is proportional to its volume, (iii) the noise in measuring a signal limits determination of the direction of a stimulus, and (iv) the time available to determine stimulus direction or to swim a straight path is limited by rotational diffusion caused by Brownian motion. In all cases, it is found that there is a sharp size limit below which locomotion has no apparent benefit. This size limit is estimated to most probably be about 0.6 micron diameter and is relatively insensitive to assumed values of the other parameters. A review of existing descriptions of free-floating bacteria reveals that the smallest of 97 motile genera has a mean length of 0.8 micron, whereas 18 of 94 nonmotile genera are smaller. Similar calculations have led to the conclusion that a minimum size also exists for use of pheromones in mate location, although this size limit is about three orders of magnitude larger. In both cases, the application of well-established physical laws and biological generalities has demonstrated that a common feature of animal behavior is of no use to small free-swimming organisms.

Bacterial Physiological Phenomena↗

Efficiency and the role of adaptation in klinokinesis.

Klinokinesis is a behavioral mechanism in which an organism moves toward or away from a stimulus source by altering its frequency of change of direction without biasing its turns with respect to the stimulus field. Computer simulation was used to study the efficiency of, and the effect of sensory adaptation on, this behavioral strategy. In modeling an organism with perfect performance (no error in determining the intensity of the stimulus and ability to move in perfectly straight lines) efficiency was about 70% without adaptation, and declined as the rate of adaptation increased. In contrast, models with non-perfect (noisy) performance were frequently able to double or triple their reduced efficiency by adapting to the stimulus intensity. Three types of noise that degraded performance were simulated: (1) intensity noise described random fluctuations in the intensity of the stimulus that were not associated with movement of the organism in the stimulus field; (2) motor noise described random fluctuations in the direction of locomotion as the organism moved along; (3) developmental noise described random differences between individuals in a constant tendency to turn to a certain degree as they moved forward. Adaptation had similar effects with any of the three types of noise. If a particular type of noise was strong enough to degrade performance significantly, then optimal performance occurred with an adaptation rate of about 0.2 per step.

Adaptation, Physiological↗

The value of asymmetric signal processing in klinokinesis.

Klinokinesis is a behavioral mechanism in which an organism moves toward or away from a stimulus source by altering its frequency of change of direction without biasing its turns with respect to the stimulus field. Previous studies of a variety of organisms have demonstrated that rates of adaptation (or other information processing features) for increases and decreases in stimulus intensity are often very different from one another. In order to determine if such asymmetric signal processing could improve the efficiency of klinokinesis, computer modeling studies were performed. The model involved a simple generic version of klinokinesis in 2 dimensions with the rate of adaptation for increasing intensity varied independently of the rate for decreasing intensity. The effects of three types of noise that limit the performance of the model were tested - intensity noise, motor noise, and developmental noise. The results demonstrated that, with all three types of noise, the two adaptation rates had quite different effects on efficiency. The overall pattern of effects was different for each type of noise. In the cases of intensity noise and motor noise, the optimum combination of adaptation rates had a 3- to 5-fold higher rate for decreases in attractant than for increases, which is similar to what has previously been found with bacteria and nematodes.

Adaptation, Physiological↗

Limits of thermal sensation.

The sensitivity of thermal receptors and responses is compared with thermal noise in receptor cells and with thermal signals in the environment. It is demonstrated that the most sensitive responses known are far less sensitive than is physically possible but sufficiently sensitive to detect the smallest signals likely to be present in the environment. Expressions for the minimal thermal gradients detectable by organisms moving through them are derived. Thermal fluctuations in a receptor over physiologically relevant times and distances are almost certainly less than 10(-6) degrees C. The most sensitive responses reported in any organism are about a thousand times larger. The thermal gradient present in soil is nearly always greater than 10(-3) degrees C/cm and it is probably higher in other environments. The suggestion that nematodes locate plant roots based on heat production is shown to be unlikely because the gradients produced are smaller than those from other causes. Bacteria, a slime mold, rattlesnakes, and mammals are discussed in addition to nematodes.

Animals↗

Using the nematode Caenorhabditis elegans to predict mammalian acute lethality to metallic salts.

The acute lethality of the salts of eight metals--HgCl2, BeSO4.4H2O, Al(NO3)3.9H2O, CuCl2.2H2O, ZnCl2, Pb(NO3)2, CdCl2, and Sr(NO3)2--was determined using a type of free-living nematode, Caenorhabditis elegans. The LC50 values were compared to the published mammalian oral LD50 values for salts of the same metals. Within this set of chemicals, C. elegans was found to be a predictor of mammalian acute lethality, generating LC50 values parallel to the rat and mouse LD50 values. The total expenses for this testing are about 10% of the cost for mammalian acute lethality testing. The method is considered to have great promise, but further study is needed.

Animals↗

Using a microcomputer and video camera to simultaneously track 25 animals.

A system that can simultaneously track about 25 animals with the position of each determined once a second is described. The system includes a 6809 microprocessor, OS-9 operating system and application programs written in assembly and BASICO9. The movements and changes in direction of the subjects can be determined and displayed in real time. The system has proven to be valuable in studying the chemotaxis of nematodes and should be applicable to the study of other animals that can be viewed with high contrast.

Animals↗

Total luminescence spectroscopy of fluorescence changes during aging in Caenorhabditis elegans.

Total luminescence spectroscopy was employed to characterize and quantitate age-related changes in fluorescence in the nematode Caenorhabditis elegans, an established model for aging research. The excitation wavelength was varied between 250 and 590 nm in 10-nm increments. At each excitation wavelength, the emission wavelength was varied between 300 and 600 nm. Contour plots of corrected spectra were made. All fluorescence increased severalfold with age, except for that ascribed to tryptophan of soluble protein fractions. This general increase included fluorescence due to flavins, which is not expected to increase with age but has previously been observed to do so in this species. Blue emission peaks that approximated Schiff base product fluorescence were detected in whole aqueous homogenates, chloroform/methanol extracts, and detergent-cleaned cuticle preparations. Age-related increases in emission intensities of these peaks were demonstrated in aqueous homogenates and isolated cuticles. Cuticle preparations, known to be rich in collagenous protein, exhibited a fluorescence peak that approximated the recently described pyridinoline cross-link of vertebrate collagen. This peak, as well as the entire cuticle emission spectrum between 300 and 500 nm, increased dramatically with age. A fluorescence peak tentatively identified as cuticle tyrosine, characteristic of collagenous protein, also increased in older worms. The effectiveness of the spectroscopic technique in distinguishing individual fluorescence peaks in complex mixtures was demonstrated, and the potential of the nematode cuticle for age-related collagen studies was identified.

Animals↗

The avoidance of D-tryptophan by the nematode Caenorhabditis elegans.

In chemotactic studies employing countercurrent separation the nematode aenorhabditis elegans was found to avoid D-tryptophan with a threshold in the range 10(-4) to 10(-3) M. There was no response to L-tryptophan up to 10(-2) M although it appeared to partially inhibit the response to D-tryptophan.

Animals↗

Chemotaxis-defective mutants of the nematode Caenorhabditis elegans.

The technique of countercurrent separation has been used to isolate 17 independent chemotaxis-defective mutants of the nematode Caenorhabditis elegans. The mutants, selected to be relatively insensitive to the normally attractive salt NaCl, show varying degrees of residual sensitivity; some are actually weakly repelled by NaCl. The mutants are due to single gene defects, are autosomal and recessive, and identify at least five complementation groups.

Animals↗

Countercurrent separation: a new method for studying behavior of small aquatic organisms.

A new method for the analysis of behavior in small free-swimming aquatic organisms is described. In this procedure, called countercurrent separation, a dense solution flows down along the bottom of an inclined chamber while a light solution flows in the opposite direction, upward along the top of the chamber. The attraction of animals (injected into the center of the chamber) to one solution or the other is then determined by observing the proportion of animals that emerges from the chamber in that solution. When used with the nematode Caenorhabditis elegans, it is estimated that the apparatus is equivalent to at least nine theoretical plates.

Animals↗