Electroactive nanotube membranes and redox-gating.
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Crystallization↗
Biomedical subjects
Charles R Martin
Publications and source records attributed to Charles R Martin.
Resistive-pulse DNA detection with a conical nanopore sensor.
In this paper, we describe resistive-pulse sensing of two large DNAs, a single-stranded phage DNA (7250 bases) and a double-stranded plasmid DNA (6600 base pairs), using a conically shaped nanopore in a track-etched polycarbonate membrane as the sensing element. The conically shaped nanopore had a small-diameter (tip) opening of 40 nm and a large-diameter (base) opening of 1.5 microm. The DNAs were detected using the resistive-pulse, sometimes called stochastic sensing, method. This entails applying a transmembrane potential difference and monitoring the resulting ion current flowing through the nanopore. The phage DNA was driven electrophoretically through the nanopore (from tip to base), and these translocation events were observed as transient blocks in the ion current. We found that the frequency of these current-block events scales linearly with the concentration of the DNA and with the magnitude of the applied transmembrane potential. Increasing the applied transmembrane potential also led to a decrease in the duration of the current-block events. We also analyzed current-block events for the double-stranded plasmid DNA. However, because this DNA is too large to enter the tip opening of the nanopore, it could not translocate the pore. As a result, much shorter duration current-block events were observed, which we postulate are associated with bumping of the double-stranded DNA against the tip opening.
DNA↗
Alternating current impedance imaging of high-resistance membrane pores using a scanning electrochemical microscope. Application of membrane electrical shunts to increase measurement sensitivity and image contrast.
Whether an individual pore in a porous membrane can be imaged using scanning electrochemical microscopy (SECM), operated in ac impedance mode, is determined by the magnitude of the change in the total impedance of the imaging system as the SECM tip is scanned over the pore. In instances when the SECM tip resistance is small relative to the internal pore resistance, the total impedance changes by a negligible amount, rendering the pore invisible during impedance imaging. A simple solution to this problem is to introduce a low-impedance electrical shunt (i.e., a salt bridge) across the membrane. This principle is demonstrated by imaging polycarbonate membranes (6-12-microm thickness) containing between 1 and 2000 conical-shaped pores (60-nm- and 2.5-microm-diameter openings) using an approximately 1-microm-radius Pt tip. Theory and experiments show that image contrast (the change in ac current measured as the probe is scanned over the pore) is inversely proportional to the total resistance of the membrane and can be increased by a factor of approximately 50x by introducing a low-resistance electrical shunt across the membrane. Remarkably, SECM images of membranes containing a single high-resistance (approximately 1 G Omega) pore can only be imaged by short-circuiting the membrane. Image contrast also becomes independent of membrane resistance when an electrical shunt is used, allowing for more quantitative comparisons of the features in ac impedance images of different membranes.
Journal Article↗
Biosensing with conically shaped nanopores and nanotubes.
In this review we consider recent results from our group that are directed towards developing "smart" synthetic nanopores that can mimic the functions of biological nanopores (transmembrane proteins). We first discuss the preparation and characterization of conical nanopores synthesized using the track-etch process. We then consider the design and function of conical nanopores that can rectify the ionic current that flows through these pores under an applied transmembrane potential. Finally, two types of sensors that we have developed with these conical nanopores are described. The first sensor makes use of molecular recognition elements that are bound to the nanopore mouth to selectively block the nanopore tip, thus detecting the presence of the analyte. The second sensor makes use of conical nanopores in a resistive-pulse type experiment, detecting the analyte via transient blockages in ionic current.
Biosensing Techniques↗
Corking nano test tubes by chemical self-assembly.
There is tremendous current interest in using nanoparticles to deliver biomolecules and macromolecules (e.g., drugs and DNA) to specific sites in living systems. Release of the biomedical payload from the nanoparticle can be accomplished by chemical or enzymatic degradation of the nanoparticle or of the link between the payload and the nanoparticle. We are exploring an alternative payload-release strategy that builds on our work on template-synthesized nano test tubes. These are hollow nanotubes that are closed on one end and open on the other, and the dimensions can be controlled at will. If these nano test tubes could be filled with a payload and then the open end corked with a chemically labile cap, they might function as a universal delivery vehicle. We show here that silica nano test tubes can be covalently corked by chemical self-assembly of nanoparticles to the tubes. We also show that the nanoparticle corks remain attached to the mouths of the nano test tubes after liberation from the alumina template. For this proof-of-principle study, we used simple imine linkages to attach the corks to the test tubes. Schiff's bases are thermodynamically unstable in the presence of water; however, the multiple points of contact between the nano test tubes and nanoparticles allow the assembled structure to be metastable under our experimental conditions. Other chemical linkages-either more or less stable-may be more appropriate for other applications, and these are currently under development.
Drug Delivery Systems↗
Conical nanopore membranes: controlling the nanopore shape.
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Carbonates↗
Solvent-extraction and Langmuir-adsorption-based transport in chemically functionalized nanopore membranes.
We have investigated the transport properties of nanopore alumina membranes that were rendered hydrophobic by functionalization with octadecyltrimethoxysilane (ODS). The pores in these ODS-modified membranes are so hydrophobic that they are not wetted by water. Nevertheless, nonionic molecules can be transported from an aqueous feed solution on one side of the membrane, through the dry nanopores, and into an aqueous receiver solution on the other side. The transport mechanism involves Langmuir-type adsorption of the permeating molecule onto the ODS layers lining the pore walls, followed by solid-state diffusion along these ODS layers; we have measured the diffusion coefficients associated with this transport process. We have also investigated the transport properties of membranes prepared by filling the ODS-modified pores with the water-immiscible (hydrophobic) liquid mineral oil. In this case the transport mechanism involves solvent extraction of the permeating molecule into the mineral oil subphase confined with the pores, followed by solution-based diffusion through this liquid subphase. Because of this different transport mechanism, the supported-liquid membranes show substantially better transport selectivity than the ODS-modified membranes that contain no liquid subphase.
Adsorption↗
Effect of crown ether on ion currents through synthetic membranes containing a single conically shaped nanopore.
Ion-current measurements were made on synthetic polymer membranes that contained a single conically shaped nanopore. This entailed placing an electrolyte solution on either side of the membrane, using an electrode placed in each solution to control the transmembrane potential, and measuring the resulting transmembrane ion current. The effect of the crown ether commonly called 18-crown-6 (18C6) on the measured ion current was investigated. Adding 18C6 to the electrolyte solution on one side of a conical nanopore membrane provides a way to rectify the ion current flowing through the nanopore. This chemical rectification is observed only when the cation of the electrolyte is complexed by 18C6 (e.g., K+), and when the mouth diameter of the conical nanopore is of molecular dimensions, in this case approximately 1.5 nm. This chemical rectification can either augment or diminish the inherent electrostatic rectification observed with these small mouth-diameter nanopores. We have interpreted these results using a model based on the formation of a junction potential at the membrane-solution interface. This junction potential arises because the transference number for the K+-18C6 complex in bulk solution is larger than its transference number in the mouth of the conical nanopore.
Crown Ethers↗
Protein capture in silica nanotube membrane 3-D microwell arrays.
The microarray format has allowed for rapid and sensitive detection of thousands of analyte DNAs in a single sample, and there is considerable interest in extending this technology to protein biosensing. While glass is the most common substrate for microarrays, its binding capacity is limited because the glass surface is flat. One way to overcome this limitation is to develop arrays based on porous materials. Such "3-D" arrays can provide greater sensitivity because both the capture molecules and the analyte species they bind are immobilized throughout the thickness of the porous material. We describe here 3-D protein microarrays based on nanopore alumina membranes that contain silica nanotubes within the pores. These microarrays are prepared via a plasma-etch method using a TEM grid as the etch mask and consist of individual nanotube-containing microwells imbedded in a Ag film that coats the alumina membrane surface. We show that the microwells can be functionalized with antibodies and that these antibodies can capture their antigen proteins, which serve as prototype analytes. The analyte proteins are fluorescently tagged, which allows for fluorescence microscopy-based imaging of the array. The Ag surrounding the microwells shows very low background fluorescence, thus improving the signal-background ratio obtained from these arrays.
Electrochemistry↗
Nanowell-array surfaces prepared by argon plasma etching through a nanopore alumina mask.
A method for preparing a glass surface containing an ordered array of nanowells is described. These nanowell arrays are prepared via a plasma-etch method using a nanopore alumina film as the etch mask. A replica of the pore structure of the alumina mask is etched into the glass. We demonstrate that chemical information in the form of negatively charged latex nanoparticles can be selectively stored within these nanowells and not indiscriminately deposited on the surface surrounding the nanowells. To accomplish this, the chemistry of the glass surfaces within these nanowells (walls and bottoms) must be different from the chemistry of the surface surrounding the nanowells. Two different procedures were developed to make the inside vs. surrounding surface chemistries different. Atomic force microscopy (AFM) was used to image the nanowells and, via friction-force measurements, to prove that the inner nanowell surfaces can be made chemically different from the surface surrounding the nanowells.
Aluminum Oxide↗
Materials science. Expanding the molecular electronics toolbox.
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Comment↗
Template-synthesized DNA nanotubes.
There is considerable interest in DNA-functionalized nanotubes with proposed applications that include use as gene delivery vehicles, in DNA-assisted separation and assembly of carbon nanotubes, and in nanotube-based DNA sensing and separations. In all of these previous cases, the DNA molecules were attached to a nanotube composed of a second material, typically carbon; however, it might also be advantageous to have nanotubes composed entirely, or predominately, of DNA itself. We describe here a template synthesis method for preparing such DNA nanotubes. The synthetic strategy builds on prior work, where we used Mallouk's layer-by-layer alpha,omega-diorganophosphonate (alpha,omega-DOP) Zr(IV) chemistry to deposit layered alpha,omega-DOP/Zr(IV) nanotubes along the pore walls of an alumina template membrane. The DNA nanotubes described here have an outer skin of one or more of these alpha,omega-DOP/Zr(IV) layers, to provide structural integrity, surrounding an inner core of multiple double-stranded DNA layers held together by hybridization between the layers. The DNA molecules comprising these nanotubes can be varied at will, and the DNA can be released from the nanotube by melting of the DNA duplexes comprising the nanotubes.
Base Sequence↗
Protein biosensors based on biofunctionalized conical gold nanotubes.
There is increasing interest in the concept of using nanopores as the sensing elements in biosensors. The nanopore most often used is the alpha-hemolysin protein channel, and the sensor consists of a single channel embedded within a lipid bilayer membrane. An ionic current is passed through the channel, and analyte species are detected as transient blocks in this current associated with translocation of the analyte through the channel-stochastic sensing. While this is an extremely promising sensing paradigm, it would be advantageous to eliminate the very fragile lipid bilayer membrane and perhaps to replace the biological nanopore with an abiotic equivalent. We describe here a new family of protein biosensors that are based on conically shaped gold nanotubes embedded within a mechanical and chemically robust polymeric membrane. While these sensors also function by passing an ion current through the nanotube, the sensing paradigm is different from the previous devices in that a transient change in the current is not observed. Instead, the protein analyte binds to a biochemical molecular-recognition agent at the mouth of the conical nanotube, resulting in complete blockage of the ion current. Three different molecular-recognition agents, and correspondingly three different protein analytes, were investigated: (i) biotin/streptavidin, (ii) protein-G/immunoglobulin, and (iii) an antibody to the protein ricin with ricin as the analyte.
Animals↗
Nanowell-array surfaces.
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Aluminum Oxide↗
Template-synthesized protein nanotubes.
A layer-by-layer deposition strategy for preparing protein nanotubes within the pores of a nanopore alumina template membrane is described. This method entails alternately exposing the template membrane to a solution of the desired protein and then to a solution of glutaraldehyde, which acts as cross-linking agent to hold the protein layers together. The number of layers of protein that make up the nanotube walls can be controlled at will by varying the number of alternate protein/glutaraldehyde cycles. After the desired number of layers have been deposited on the pore walls, the alumina template can be dissolved to liberate the protein nanotubes. We show here that glucose oxidase nanotubes prepared in this way catalyze glucose oxidation and that hemoglobin nanotubes retain their heme electroactivity. Furthermore, for the glucose oxidase nanotubes, the enzymatic activity increases with the nanotube wall thickness.
Adsorption↗
Detecting single porphyrin molecules in a conically shaped synthetic nanopore.
We report here the first example of abiotic resistive-pulse sensing of a molecular (as opposed to a particle or macromolecular) analyte. This was accomplished by using a conically shaped nanopore prepared by the track-etch method as the sensing element. It is possible to sense the molecular analyte because the small diameter opening of the conical nanopore (approximately 4.5 nm) is comparable to the diameter of the analyte molecule (approximately 2 nm).
Journal Article↗
Smart nanotubes for biotechnology.
Nanotechnology concerns the science of very small particles and deals with both the fundamental aspects of understanding the properties of such nanoparticles and with developing technological applications of nanoparticles. Biomedical and biotechnological applications of nanoparticles have been of special recent research and development interest, with potential applications that include use of nanoparticles as drug (or DNA) delivery vehicles, and as components in medical diagnostic kits, biosensors and membranes for bioseparations. Spherical nanoparticles are typically used for such applications, but this only reflects the fact that spheres are easier to make than nanoparticles having other shapes. Micro and nanotubes - structures that resemble tiny drinking straws - are alternatives and may offer advantages over spherical nanoparticles for some applications. This article discusses different approaches for making micro and nanotubes and reviews the current status of efforts to develop biomedical and biotechnological applications of these tubular structures.
Biotechnology↗
DNA-nanotube artificial ion channels.
There is considerable interest in developing chemical devices that mimic the function of biological ion channels. We recently described such a device, which consisted of a single conically shaped gold nanotube embedded within a polymeric membrane. This device mimicked one of the key functions of voltage-gated ion channels: the ability to strongly rectify the ionic current flowing through it. The data obtained were interpreted using a simple electrostatic model. While the details are still being debated, it is clear that ion-current-rectification in biological ion channels is more complicated and involves physical movement of an ionically charged portion of the channel in response to a change in the transmembrane potential. We report here artificial ion channels that rectify the ion current flowing through them via this "electromechanical" mechanism. These artificial channels are also based on conical gold nanotubes, but with the critical electromechanical response provided by single-stranded DNA molecules attached to the nanotube walls.
Biomimetic Materials↗