Spirastrellolide B reveals the absolute configuration of the spirastrellolide macrolide core.
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Anti-Bacterial Agents↗
Biomedical subjects
Brian O Patrick
Publications and source records attributed to Brian O Patrick.
Janus-AT bases: synthesis, self-assembly, and solid state structures.
The high yielding synthesis of heterocycles with defined H-bond accepting and donating capabilities provides for the design of self-assembling structures and specific recognition of biological targets. Herein we report the syntheses and solid-state structures of three self-complementary uracil/thymine derivatives where each presents the standard ADA face inherently complementary to adenine and a synthetically appended DAD face complementary to uracil/thymine. These heterocycles, which have never before been reported or characterized, represent diaminopurine-uracil/thymine hybrids that, in two of the three cases, relate to previously reported heterocyclic hybrids of G and C. All three heterocycles crystallized to afford the first X-ray crystal structures of self-complementary heterocycles capable of ADA-DAD pairing. The potential use in DNA and RNA recognition are briefly discussed.
Adenine↗
Platinum(II)-catalyzed cyclizations forming quaternary carbon centers, using enesulfonamides, enecarbamates, or enamides as nucleophiles.
Cyclic enesulfonamides, enecarbamates, or enamides tethered to an alkyne cyclize readily with use of platinum(II) chloride. This reaction generates quaternary-substituted carbon centers within simple spiro-fused or more complex tri- and tetracyclic heterocyclic ring systems. The yields for this process range from 50% to 83%. [reaction: see text].
Alkenes↗
An easy-to-use, regioselective, and robust bis(amidate) titanium hydroamination precatalyst: mechanistic and synthetic investigations toward the preparation of tetrahydroisoquinolines and benzoquinolizine alkaloids.
Amidate-supported titanium amido complexes are efficient and regioselective precatalysts for intermolecular hydroamination of terminal alkynes with primary amines. The synthesis and characterization of the first bis(amidate)-supported titanium-imido complex is reported. Its role as the active catalytic species is suggested in the course of product distribution studies using deuterated substrates. The bis(amidate)-supported precatalysts exhibit good functional-group tolerance, even performing hydroaminations in the presence of ester and amide groups. This functional-group tolerance was exploited in the synthesis of a variety of 1-substituted tetrahydroisoquinoline alkaloids and a one-pot hydroaminative procedure for the high yielding preparation of the benzo[a]quinolizine skeleton.
Alkaloids↗
Exiguamine A, an indoleamine-2,3-dioxygenase (IDO) inhibitor isolated from the marine sponge Neopetrosia exigua.
Exiguamine A (1), a hexacyclic alkaloid with an unprecedented skeleton, has been isolated from the marine sponge Neopetrosia exigua collected in Papua New Guinea. The structure of exiguamine A (1) was elucidated by a combination of spectroscopic analysis and single-crystal X-ray diffraction analysis. Exiguamine A (1) has a Ki of 210 nM for inhibition of indoleamine-2,3-dioxygenase (IDO) in vitro, making it one of the most potent IDO inhibitors known to date. A putative biogenesis for the new exiguamine skeleton starts from DOPA, tryptophan, and N,N-dimethylhydantoin.
Animals↗
Concurrent N-H and alpha-C-H bond activations of pyrrolidine and piperidine under ambient conditions by 18e tungsten allyl nitrosyl complexes.
18e Cp*W(NO)(CH2CMe3)(eta3-allyl) complexes effect concurrent N-H and alpha-C-H bond activations of cyclic, saturated amines under mild conditions, the conversions involving pyrrolidine being shown. In a similar manner, treatment of Cp*W(NO)(CH2CMe3)(eta3-3,3-Me2C3H3) with piperidine at room temperature results in the clean formation of the alkyl amido complex, Cp*W(NO)(CH2CMe3)(NC5H9CMe2CHCH2).
Journal Article↗
Formazans as beta-diketiminate analogues. Structural characterization of boratatetrazines and their reduction to borataverdazyl radical anions.
Formazans react with boron triacetate to produce boratatetrazines, which can be reduced to yield borataverdazyl radical anions--the first boron containing verdazyl radicals.
Journal Article↗
Inner-sphere two-electron reduction leads to cleavage and functionalization of coordinated dinitrogen.
Activation of molecular nitrogen by transition metal complexes is an area of current interest as investigations using the inert N2 molecule to produce higher-value organonitrogen compounds intensify. In an attempt to extend the addition of hydride reagents E-H (where E = BR2, AlR2, and SiR3) to the dinitrogen complex ([NPN]Ta)2(mu-H)2(mu-eta1:eta2-N2) [1; where NPN = (PhNSiMe2CH2)2PPh], the reaction with zirconocene chlorohydride, [Cp2Zr(Cl)H]x, was examined. The crystalline product formed in 35% yield was determined to be ([NP(N)N]Ta)(mu-H)2(mu-N)(Ta[NPN])(ZrCp2) (2) in which the coordinated N2 has been cleaved to form a phosphinimide bridging between Ta and Zr and a triply bridging nitride. The mechanism of this reaction was examined to determine the fate of the chloride and hydride ligands attached to Zr in the starting zirconocene reagent. Using the zirconocene dihydride dimer ([Cp2ZrH2]2), a higher yield of 2 was obtained (76%), and H2 was also observed by 1H NMR spectroscopy. To probe the origin of the eliminated H2, the dideuterated dinitrogen complex ([NPN]Ta)2(mu-D)2(mu-eta1:eta2-N2) (d2-1) was allowed to react with ([Cp2ZrH2]2), which resulted in the formation of ([NP(N)N]Ta)(mu-D)2(mu-N)(Ta[NPN])(ZrCp2), (d2-2), with no evidence of hydrogen for deuterium scrambling between the starting zirconocene dihydride and the ditantalum dinitrogen complex. Studies into the use of preformed Zr(II) and Ti(II) reagents were also performed. The proposed mechanism involves initial adduct formation that facilitates inner-sphere electron transfer to cleave the N-N bond to form a species with bridging nitrides, one of which is transformed by nucleophilic attack of a phosphine donor to generate the observed phosphinimide.
Electrons↗
Glucosamine conjugates of tricarbonylcyclopentadienyl rhenium(I) and technetium(I) cores.
To obtain a 99mTc glucose conjugate for imaging, double-ligand transfer (DLT) and related reactions were examined for the preparation of CpM(CO)3 (Cp = cyclopentadienyl; M = Re, Tc) complexes with pendant carbohydrates at Cp. Tricarbonyl{N-(1,3,4,6-tetra-O-acetyl-2-amino-2-deoxy-beta-D-glucopyranose)cyclopentadienyl carboxamide}rhenium(I) (1a) and tricarbonyl{N-(2-amino-2-deoxy-beta-D-glucopyranose)cyclopentadienyl carboxamide}rhenium(I) (2a) were prepared. The compounds were fully characterized by mass spectrometry, elemental analysis, IR, and NMR spectroscopy. Full assignment of the NMR spectra verified the pendant nature of the glucosamine moieties in the solution state and that 2a exists as both anomers. The solid-state structure of 2a was determined by X-ray crystallography, again confirming the pendant nature of the glucosamine, but differing from the solution state in that the beta anomer crystallized preferentially (93%). Compound 2a was determined to be a high-affinity competitive inhibitor (Ki = 330 +/- 70 microM) of the glucose metabolism enzyme hexokinase, demonstrating that it retains certain biological activity. The 99mTc analogues 1b and 2b were prepared in moderate radiochemical yields by means of the single-ligand transfer (SLT) route, which is more pertinent to radiopharmaceutical synthesis.
Glucosamine↗
Ruthenium(III) maltolato-nitroimidazole complexes: synthesis and biological activity.
The Ru(III) metronidazole-maltolato and -ethylmaltolato complexes, trans-[RuL(2)(metro)(2)]CF(3)SO(3) (L=ma (1a) or etma (1b)), have been synthesized and tested for potential anti-tumour activity against the human breast cancer cell line MDA-MB-435S using a so-called MTT assay in phosphate-buffered saline; ma=3-hydroxy-2-methylpyran-4-onato, etma=2-ethyl-3-hydroxypyran-4-onato, metro=2-methyl-5-nitro-1H-imidazole-1-ethanol (metronidazole); MTT=3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide. The complexes exhibit lower IC(50) values than our previously reported Ru(III) tris-maltolato and -ethylmaltolato complexes [D.C. Kennedy, A. Wu, B.O. Patrick, B.R. James, Inorg. Chem. 44 (2005) 6529-6535]. An improved synthetic route to the 2-nitroimidazole EF5 (2-(2-nitro-1-H-imidazol-1-yl)-N-(2,2,3,3,3-pentafluoropropyl)acetamide) is reported, as well as a related synthesis of a 3-nitro-1,2,4-triazole derivative of EF5, triF5 (2-(3-nitro-1-H-triazol-1-yl)-N-(2,2,3,3,3- pentafluoropropyl)acetamide). The complexes [RuL(2)(EF5)(2)]CF(3)SO(3) (4a and 4b) and [Ru(ma)(2)(triF5)(2)]CF(3)SO(3) (5) were prepared from the [RuL(2)(EtOH)(2)]CF(3)SO(3) complexes (3a and 3b); IC(50) values for 3-5 are high. Data on the uptake of Ru by the cells are also reported. The complexes were characterized generally by all or some of the following methods: elemental analyses, NMR, IR and mass spectroscopies, conductivity, and cyclic voltammetry; complexes 1a and 1b were also analyzed by X-ray crystallography.
Antineoplastic Agents↗
Phosphorus copies of PPV: pi-conjugated polymers and molecules composed of alternating phenylene and phosphaalkene moieties.
A new class of pi-conjugated macromolecule, poly(p-phenylenephosphaalkene) (PPP), is reported. PPPs are phosphorus analogues of the important electronic material poly(p-phenylenevinylene) (PPV) where P=C rather than C=C bonds space phenylene moieties. Specifically, PPPs [-C(6)R(4)-P=C(OSiMe(3))-C(6)R'(4)-C(OSiMe(3))=P-](n)() (1: R = H, R' = Me; 11: R = Me, R' = H) were synthesized by utilizing the Becker reaction of a bifunctional silylphosphine, 1,4-C(6)R(4)[P(SiMe(3))(2)](2), and diacid chloride 1,4-C(6)R'(4)[COCl](2). Several model compounds for PPP are reported. Namely, mono(phosphaalkene)s R-P=C(OSiMe(3))-R' (4: R = Ph, R' = Mes; 7: R = Mes, R' = Ph), C-centered bis(phosphaalkene)s R-P=C(OSiMe(3))-C(6)R'(4)-C(OSiMe(3))=P-R (5: R = Ph, R' = Me; 8: R = Mes, R' = H), and P-centered bis(phosphaalkene)s R-C(OSiMe(3))=P-C(6)R'(4)-P=C(OSiMe(3))-R (6: R = Mes, R' = H; 10: R = Ph, R' = Me). Remarkably, selective Z-isomer formation (i.e., trans arylene moieties) is observed for PPPs when bulky P-substituents are employed while E/Z-mixtures are otherwise obtained. X-ray crystal structures of Z-7, Z,Z-8, and Z,Z-10 suggest moderate pi-conjugation. The twist angles between the P=C plane and unsubstituted arenes are 16 degrees -26 degrees , while those between the P=C plane and methyl-substituted arenes are 59 degrees -67 degrees . The colored PPPs and their model compounds were studied by UV/vis spectroscopy, and the results are consistent with extended pi-conjugation. Specifically, weakly emissive polymer E/Z-1 (lambda(max) = 338 nm) shows a red shift in its absorbance from model E/Z-4 (lambda(max) = 310 nm), while a much larger red shift is observed for Z-11 (lambda(max) = 394 nm) over Z-7 (lambda(max) = 324 nm).
Journal Article↗
Scope and limitations of the base-catalyzed phospha-peterson P=C bond-forming reaction.
Phosphaalkenes (MesP=CRR': R = R' = Ph (1a); R = R' = 4-FC6H4 (1b); R = Ph, R' = 4-FC6H4 (1c); R = R' = 4-OMeC6H4 (1d); R = Ph, R' = 4-OMeC6H4 (1e); R = Ph, R' = 2-pyridyl (1f)) are prepared from the reaction of MesP(SiMe3)2 and O=CRR' in the presence of a trace of KOH or NaOH. The base-catalyzed phospha-Peterson reaction is quantitated by NMR spectroscopy, and isolated yields of phosphaalkene between 40 and 70% are obtained after vacuum distillation and/or recrystallization. The asymmetrically substituted phosphaalkenes (1c, 1e, 1f) form as 1:1 mixtures of E and Z isomers; however, X-ray crystallography reveals that the E isomers crystallize preferentially. Interestingly, E-1e and E-1f readily isomerize in solution in the dark, although the rate of isomerization is much faster when samples are exposed to light. X-ray crystal structures of 1b, E-1e, and E-1f reveal that the P=C bond lengths (average of 1.70 A) are in the long end of the range typically found in phosphaalkenes (1.61-1.71 A). Attempts to prepare isolable P-adamantyl phosphaalkenes following this route were unsuccessful. Although AdP=CPh2 (2a) is detected by 31P NMR spectroscopy, attempts to isolate this species afforded the 1,2-diphosphetane (AdPCPh2)2 (3a), which was characterized by X-ray crystallography.
Journal Article↗
Luminescence of ruthenium halide complexes containing a hemilabile phosphine pyrenyl ether ligand.
A series of Ru(II) complexes, tcc-RuX2(POC4Pyr-P,O)2 (X = Cl (3), Br (4), I (5)), containing the hemilabile phosphine pyrenyl ether ligand 4-{2-(diphenylphosphino)phenoxy}butylpyrene (POC4Pyr (1)) are reported. The synthesis and spectroscopic properties of both the ligand, POC4pyr (1), and ligand oxide, P(=O)OC4pyr 2, and the solid-state structure of 1 are reported. Complexes 3-5 react rapidly with CO to give complexes ttt-RuX2(CO)2(POC4pyr-P)2 (X = Cl (6), Br (7), I (8)). No pyrene excimer emission is detected from 3-5; however, different intensities of excimer emission are observed for 6-8. The intensity of excimer emission decreases through the series, with 6 showing the most intense response. The emission is solely due to intramolecular pyrene excimers at low concentrations (< or =10(-4) M). Comparison of the UV-vis and steady-state fluorescence spectra shows overlap between the low energy d-d absorption of 7 and 8 with excimer emission (480 nm), suggesting nonradiative energy transfer may be occurring. Once excess CO is removed, complexes 6-8 isomerize to cis-dicarbonyl complexes cct-RuX2(CO)2(POC4Pyr-P)2 (X = Cl (9), Br (10), I (11)). The intensity of excimer emission from 9-11 increases with respect to the excimer emission observed for 6-8, with 9 showing a significant increase in excimer intensity.
Journal Article↗
S,S-1,2-Dicyclohexylethane-1,2-diol and its racemic compound: a striking exception to Wallach's rule.
The structures of enantiopure S,S-1,2-dicyclohexylethane-1,2-diol and its racemic compound (rac-S,S-1,2-dicyclohexylethane-1,2-diol) have been determined at 295 and 173 K. The crystals of the enantiopure material are more than 4% denser than the crystals of the racemic compound, but the melting points indicate that the crystals of the less dense racemic compound are considerably more stable than those of the racemic conglomerate. This apparent exception to the correlation of crystal density and melting point is explained. The enantiopure crystals have four molecules in the asymmetric unit (Z' = 4). Two of the molecules have the conformation observed for the one independent molecule of the racemic compound and two have a higher energy conformation; the overall P2(1) structure is a perturbed version of a P2(1)2(1)2(1) structure with Z' = 2. The enantiopure and racemic crystals have the same hydrogen-bonding motif, but the motif in the former appears to be significantly strained. A reason why crystals of enantiopure material might be systematically less dense than crystals of its racemic compound and to be more likely to have Z' > 1 is suggested.
Journal Article↗
New oligophosphines and (hydroxymethyl)phosphonium chlorides.
The new oligophosphines [H2P(CH2)2]2PH, [H2P(CH2)2P(H)CH2]2, and{[(H2P(CH2)2]2PCH2}2 have been made by hydrophosphination of diethyl vinylphosphonate (2) with H2P(CH2)2PH2 (1), using different ratios of 2/1, followed by LiAlH4 reduction of the phosphonate intermediates; the three phosphonate precursors were obtained as oils of varying purity (approximately 90-95%) in low (approximately 20%) to almost quantitative yield. The tri-, tetra-, and hexaphosphines were then treated with formaldehyde in the presence of hydrochloric acid to generate the corresponding water-soluble (hydroxymethyl)phosphonium chlorides {(HOCH2)3P[(CH2)2P(CH2OH)2]n(CH2)2P(CH2OH)3}Cl m (n = 1, m = 3; n = 2, m = 4) and {[(HOCH2)3P(CH2)2]2P(CH2OH)CH2}2Cl6 that were characterized by NMR spectroscopy and elemental analysis. The known (hydroxymethyl)bisphosphonium chloride [(HOCH2)3P(CH2)2]2Cl2 was similarly prepared from H2P(CH2)2PH2, and the determined crystal structure revealed strong hydrogen bonding between the chloride anions and the hydrogen atoms of the hydroxymethyl groups.
Journal Article↗
N-salicylideneanilines: tautomers for formation of hydrogen-bonded capsules, clefts, and chains.
[structure: see text] The synthesis, characterization, and solid-state structures of new salicylaldimines are reported. Bis(N-salicylideneaniline)s (BSANs) and tris(N-salicylideneaniline)s (TSANs) are sterically encumbered compounds featuring a central six-membered ring in the keto-enamine tautomer. When extended with additional functional groups, these molecules may form hydrogen-bonded capsules, clefts, and extended structures. A TSAN with N-(t)()BOC-o-phenylenediamine groups has been structurally investigated. The complementary hydrogen-bonding motif in this molecule leads it to form dimers in solution and in the solid state. A BSAN with N-(t)()BOC-o-phenylenediamine substituents forms a hydrogen-bonded cleft in solution but forms an extended hydrogen-bonded ladder assembly of cofacial dimers in the solid state. When N-(t)()BOC-1,8-naphthalenediamine was utilized to extend the cleft, an unusual perimidine structure was obtained with the central core in the enol tautomer. In addition, ab initio calculations have been used to support the assignment of the keto-enamine or enol-imine tautomers of the BSANs and TSANs and to predict tautomerization in related BSANs and TSANs.
Journal Article↗
Liphagal, a Selective inhibitor of PI3 kinase alpha isolated from the sponge akacoralliphaga: structure elucidation and biomimetic synthesis.
[structure: see text] Liphagal (1), a selective inhibitor of PI3K alpha, has been isolated from the marine sponge Aka coralliphaga collected in Dominica. The "liphagane" meroterpenoid carbon skeleton of liphagal (1) is new. A biomimetic total synthesis has been used to confirm the constitution of liphagal (1) and support a proposed biogenesis.
Androstadienes↗
Structure, bonding, and reactivity of Ti and Zr amidate complexes: DFT and X-ray crystallographic studies.
Easily prepared and highly modular organic amide proligands have been used to synthesize a series of new bis(amidate)-bis(amido) Ti and Zr complexes via protonolysis. These complexes have been structurally characterized by NMR spectroscopy and X-ray crystallography. The solid-state molecular structures of these complexes indicate that the amidate ligands bind to the metal centers in an exclusively bidentate fashion, resulting in discrete monomeric species. Geometric isomerism in these species is highly dependent upon the steric characteristics of the proligands utilized in the synthesis. In solution, these complexes are observed to isomerize on the NMR time scale, with one isomer being predominant. Bonding in the bis(amidate)-bis(amido) complexes was investigated by DFT calculations. The geometric isomers predicted by theory matched the experimentally observed results, within experimental error. The orbitals associated with amidate-metal bonding are energetically well below the frontier orbitals. The HOMO in these complexes is a pi orbital associated with amido ligand-to-metal bonding character, while the LUMO in all cases is a vacant d orbital on the metal center.
Journal Article↗