Biomedical subjects

B Hammer

Publications and source records attributed to B Hammer.

At least 19 recordsLinked to original sources

PubMed2006

Clustering of chemisorbed H(D) atoms on the graphite (0001) surface due to preferential sticking.

We present scanning tunneling microscopy experiments and density functional theory calculations which reveal a unique mechanism for the formation of hydrogen adsorbate clusters on graphite surfaces. Our results show that diffusion of hydrogen atoms is largely inactive and that clustering is a consequence of preferential sticking into specific adsorbate structures. These surprising findings are caused by reduced or even vanishing adsorption barriers for hydrogen in the vicinity of already adsorbed H atoms on the surface and point to a possible novel route to interstellar H2 formation.

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PubMed2006

Role of Au(+) in supporting and activating Au(7) on TiO(2)(110).

The adhesion properties and catalytic activity of rutile TiO(2)(110)-supported Au(7) nanoclusters in different oxidation states are investigated by means of density functional theory. The calculations cover both surface science conditions of reduced TiO(2) and real catalyst conditions of oxidized (alkaline) TiO(2) supports. Large adhesion energies of Au(7) are found only when modeling real catalysts where the cluster becomes cationic with Au(+) ions in Au-O or Au-OH bonds. The full catalytic cycle for oxidation of CO by O(2) over Au(7) on alkaline TiO(2)(110) is calculated and found to involve only small activation barriers. In the presence of the CO reductant, the Au(+) sites are capable of cycling between bonding of atomic and molecular oxygen. We confirm our findings by comparison of calculated and experimental infrared stretch frequency data for adsorbed CO.

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PubMed2006

Fuzzy classification by fuzzy labeled neural gas.

We extend the neural gas for supervised fuzzy classification. In this way we are able to learn crisp as well as fuzzy clustering, given labeled data. Based on the neural gas cost function, we propose three different ways to incorporate the additional class information into the learning algorithm. We demonstrate the effect on the location of the prototypes and the classification accuracy. Further, we show that relevance learning can be easily included.

Algorithms↗

PubMed2006

Mineralization and mechanical properties of the canine mandible distraction wound following acute molding.

To investigate the influence of an acute single step callus manipulation immediately after distraction on mechanical properties and mineralization of the regenerate, custom made distraction devices were bilaterally placed in the mandibular angle of 15 beagle dogs, allowing to simultaneously compress and stretch the regenerate after completed linear distraction. The animals were divided in three groups (n=5): Group 1 and 2 underwent manipulation of the regenerate, group 3 remained in a linear position. After 42 (group1) and 90 (group 2 and 3) days of consolidation the animals were sacrificed. The mechanical properties were assessed in an Instron testframe and bone density quantified by quantitative computed tomography and three- dimensionally assessed (Scion Image processing and analysis software). After 6 weeks of consolidation 25% of the specimens reached a stiffness which was >/=90% of the mean values of the unoperated reference hemi-mandibles. After a 13 week consolidation period, 62.5% were as stiff as the referenced specimens. Manipulated regenerates, allowed to heal under stable conditions for 13 weeks, had the same mechanical properties as specimens that underwent pure linear distraction. A temporary but not significant delay of osseous healing had to be postulated for the stretched zone after 6 weeks, indicating this area to be more critical than the compressed area.

Animals↗

PubMed2006

Density functional theory study of water dissociation in a double water bilayer with or without coadsorption of CO on Pt(111).

Using density functional theory, we investigate the structure of the double water bilayer with or without coadsorption of CO on Pt(111). The double water bilayer consists of two bilayers. Each bilayer is buckled with every second water molecule being closer to the surface than every other water molecule. CO is found to adsorb most strongly when substituting in the first bilayer, the water molecule closest to the surface. Dissociation of H2O in the water bilayer (with or without CO) is further considered. A great number of pathways for the dissociation are studied. These include homolytic pathways where both dissociation products end up adsorbed on the Pt surface and heterolytic pathways where only the OH is adsorbed, while a proton is transferred to the water adlayers. We find that the heterolytic dissociation pathways are energetically more favorable than the homolytic ones, yet they are all rather endothermic. The most favorable pathways found have reaction energies of 0.60 and 0.52 eV without and with CO present. The corresponding activation energies are 0.99 and 0.53 eV, respectively.

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PubMed2006

Metastable structures and recombination pathways for atomic hydrogen on the graphite (0001) surface.

We present scanning tunneling microscopy results which reveal the existence of two distinct hydrogen dimer states on graphite basal planes. Density functional theory calculations allow us to identify the atomic structure of these states and to determine their recombination and desorption pathways. Direct recombination is only possible from one of the two dimer states. This results in increased stability of one dimer species and explains the puzzling double peak structure observed in temperature programmed desorption spectra for hydrogen on graphite.

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PubMed2006

Formation and splitting of paired hydroxyl groups on reduced TiO2(110).

A combination of high-resolution scanning tunneling microscopy and density functional theory is utilized to study the interaction of water with the reduced TiO2(110)-(1 x 1) surface. As the direct product of water dissociation in oxygen vacancies, paired hydroxyl groups are formed. These pairs are immobile and stable unless they interact with adsorbed water molecules. As a result of these interactions, protons are transferred to adjacent oxygen rows, thereby forming single hydroxyl groups. Additionally, we show that hydroxyl groups facilitate the diffusion of water molecules over the oxygen rows.

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PubMed2006

Chiral recognition of organic molecules by atomic kinks on surfaces.

Two distinct non-mirror-symmetric conformations of D- and L-cysteine were found after adsorption on Au(17 11 9)S. This demonstrates chiral heterorecognition, i.e., enantioselectivity of S kinks on vicinal Au(111). The structures as determined by angle scanned x-ray photoelectron diffraction agree well with those from density functional theory calculations. The calculations predict adsorption energies of approximately 2 eV where D-cysteine binds 140 meV stronger than L-cysteine. The classical three point contact model for molecular recognition fails to explain these findings.

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PubMed2006

Pathogens and host DNA in Ixodes ricinus nymphal ticks from a German forest.

Unfed nymphs of Ixodes ricinus were collected from vegetation in a forest on the outskirts of Berlin, Germany and were analyzed for host and pathogen DNA. Pathogens were detected in 47% of the ticks. Borrelia afzelii was the commonest pathogen detected, followed by Rickettsia helvetica. Other pathogens included B. valaisiana, B. garinii, B. burgdorferi sensu stricto, Anaplasma phagocytophilum, and a relapsing fever-like Borrelia. Most of the host DNA detected was of rodent origin and was associated with infection by B. afzelii, R. helvetica, and A. phagocytophilum. Bird DNA was associated with B. valaisiana and B. garinii, and ruminant DNA with A. phagocytophilum. B. afzelii was also found in two ticks that contained bird DNA.

Anaplasma phagocytophilum↗

PubMed2005

Structure and reactivity of surface oxides on Pt(110) during catalytic CO oxidation.

We present the first structure determination by surface x-ray diffraction during the restructuring of a model catalyst under reaction conditions, i.e., at high pressure and high temperature, and correlate the restructuring with a change in catalytic activity. We have analyzed the Pt(110) surface during CO oxidation at pressures up to 0.5 bar and temperatures up to 625 K. Depending on the pressure ratio, we find three well-defined structures: namely, (i) the bulk-terminated Pt(110) surface, (ii) a thin, commensurate oxide, and (iii) a thin, incommensurate oxide. The commensurate oxide only appears under reaction conditions, i.e., when both and CO are present and at sufficiently high temperatures. Density functional theory calculations indicate that the commensurate oxide is stabilized by carbonate ions (CO3(2-)). Both oxides have a substantially higher catalytic activity than the bulk-terminated Pt surface.

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PubMed2005

Comparison of relevance learning vector quantization with other metric adaptive classification methods.

The paper deals with the concept of relevance learning in learning vector quantization and classification. Recent machine learning approaches with the ability of metric adaptation but based on different concepts are considered in comparison to variants of relevance learning vector quantization. We compare these methods with respect to their theoretical motivation and we demonstrate the differences of their behavior for several real world data sets.

Artificial Intelligence↗

PubMed2005

One-dimensional PtO2 at Pt steps: formation and reaction with CO.

Using core-level spectroscopy and density functional theory we show that a one-dimensional (1D) oxide structure forms at the steps of the Pt(332) surface after exposure. The 1D oxide is found to be stable in an oxygen pressure range, where bulk oxides are only metastable, and is therefore argued to be a precursor to the Pt oxidation. As an example of the consequences of such a precursor exclusively present at the steps, we investigate the reaction of CO with oxygen covered Pt(332). Albeit more strongly bound, the oxidic oxygen is found to react more easily with CO than oxygen chemisorbed on the Pt terraces.

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PubMed2005

Oxygen adsorption at anionic free and supported Au clusters.

The structure, stability, and O2 adsorption properties of anionic Au(n) (n=1-11) clusters either free or supported at defected MgO100 surfaces are investigated using density-functional theory. O2 adsorption is strong whenever unpaired electrons are present, except for at some small, supported, planar, high-band-gap clusters. These clusters have the unpaired electrons pinned by the Madelung potential of the support. Larger clusters (starting at Au7-Au8) become three dimensional and metallic. This ensures that while one cluster orbital is pinned to the defect, another orbital at comparable energy can undergo depletion, thus binding O2 with charge transfer.

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PubMed2005

[Evaluation of potential damage to the regenerate during callus molding after mandibular distraction osteogenesis. Experimental study using an animal model].

BACKGROUND: Molding the regenerate created by distraction osteogenesis has clinically been shown to be an efficient lifeboat, good enough that for complex three-dimensional deformities final adjustments by molding the regenerate may be part of the treatment plan. The study assessed the limits of molding a regenerate, taking into consideration compressive and tensile forces acting simultaneously on the fresh callus. MATERIAL AND METHODS: Distraction osteogenesis was performed in 15 beagle mandibles using custom-made devices which allowed for lengthening as well as for angulation. After linear distraction of 10 mm, a defined 20 degrees angulation was performed in one acute step. The position of the fulcrum of the device allowed the regenerate to be compressed and stretched simultaneously. The effects on bone healing were assessed after 6 or 13 weeks of consolidation and compared to a control group where only linear distraction was performed. RESULTS: Radiological and histological investigations demonstrated that no significant difference between the biological behavior of the compressed and the stretched zone of the regenerate could be found. However, there were signs, showing the more critical character of the stretched area. After 6 weeks of consolidation, some specimens revealed delayed ossification of the stretched zone. Under stable conditions, this delay was compensated after 13 weeks of consolidation and complete osseous healing occurred. CONCLUSIONS: Under stable conditions, a fresh regenerate can be molded to a considerable extent without endangering osseous healing permanently. Nevertheless, tensile forces acting on the regenerate should be minimized to prevent damage to the new bone. This can be achieved by overdistraction prior to callus molding or by gradually changing the vector of distraction during the lengthening process.

Animals↗

PubMed2004

Oxidation of Pt(110).

Using scanning tunneling microscopy and temperature programmed desorption we investigate the Pt(110) surface under strongly oxidizing conditions involving either high-pressure O2 or atomic oxygen exposure. At low temperatures, only disordered Pt oxide structures are observed. After annealing ordered surface oxide islands are observed to coexist with a highly stable reconstructed (12x2)-O chemisorption structure. From density functional theory calculations a model for the surface oxide phase is revealed. The phase is found to be metastable, and its presence is explained in terms of stabilizing defects in the chemisorption layer and reduced Pt mobility.

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PubMed2004

Two-step reaction on a strained, nanoscale segmented surface.

By means of scanning tunneling microscopy and density functional theory calculations we demonstrate that on the Rh(110)-(10 x 2)-O surface, a prototypical multiphase surface of an oxidized transition metal model catalyst, water formation upon H2 exposure is a two-step reaction, with each step requiring special active sites. The 1st step initiates at (2 x 1)p2mg-O defect islands in the (10 x 2) structure and propagates across the surface as a reaction front, removing half of the adsorbed oxygen. The oxygen decorated Rh ridges of the (10 x 2) structure lose their tensile strain upon this reduction step, whereby nanoscale patches of clean Rh become exposed and act as special reaction sites in the 2nd reaction step, which therefore initiates homogeneously over the entire surface.

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PubMed2004

Growth of unidirectional molecular rows of cysteine on Au(110)-(1 x 2) driven by adsorbate-induced surface rearrangements.

Using scanning tunneling microscopy we have studied the nucleation and growth of unidirectional molecular rows upon adsorption of the amino acid cysteine onto the anisotropic Au(110)-(1 x 2) surface under ultrahigh vacuum conditions. By modeling a large variety of possible molecular adsorption geometries using density-functional theory calculations, we find that in the optimum, lowest energy configuration, no significant intermolecular interactions exist along the growth direction. Instead the driving force for formation of the unidirectional molecular rows is an adsorbate-induced surface rearrangement, providing favorable adsorption sites for the molecules.

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PubMed2004

Adsorption of O2 and oxidation of CO at Au nanoparticles supported by TiO2(110).

Density functional theory calculations are performed for the adsorption of O2, coadsorption of CO, and the CO+O2 reaction at the interfacial perimeter of nanoparticles supported by rutile TiO2(110). Both stoichiometric and reduced TiO2 surfaces are considered, with various relative arrangements of the supported Au particles with respect to the substrate vacancies. Rather stable binding configurations are found for the O2 adsorbed either at the trough Ti atoms or leaning against the Au particles. The presence of a supported Au particle strongly stabilizes the adsorption of O2. A sizable electronic charge transfer from the Au to the O2 is found together with a concomitant electronic polarization of the support meaning that the substrate is mediating the charge transfer. The O2 attains two different charge states, with either one or two surplus electrons depending on the precise O2 adsorption site at or in front of the Au particle. From the least charged state, the O2 can react with CO adsorbed at the edge sites of the Au particles leading to the formation of CO2 with very low (approximately 0.15 eV) energy barriers.

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