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Biomedical subjects

B Chakrabarti

Publications and source records attributed to B Chakrabarti.

At least 73 records · Page 4Linked to original sources

Sensitized photo-oxidation of bovine alpha-crystallin: change in microenvironments of thiol groups.

Methylene blue- or riboflavin-sensitized photo-oxidation of alpha-crystallin caused a major change in the environment of thiol groups of the protein which could not be significantly prevented by inhibitors specific for active species of oxygen, 1O2, .OH, O.2, and H2O2. In contrast, the sensitizer N-formylkynurenine had no such effect. Sensitizer-induced change in the microenvironments of thiol groups was attributed to a conformational alteration, probably an unfolding of the protein.

Animals↗

Ascorbic acid therapy in a thermal burn model of corneal ulceration in rabbits.

We studied the effect of topical and systemic ascorbic acid on a rabbit model of corneal ulceration produced by thermal burn. Central stromal ulceration occurred in 77% to 100% of eyes in all treatment groups. The rate of ulceration was accelerated in animals treated with systemic ascorbic acid. Ulceration began after 5.80 +/- 2.14 days in control eyes and 2.75 +/- 1.26 days in the eyes of rabbits treated with both topical and systemic ascorbic acid (P less than .02). Subconjunctival ascorbic acid alone did not affect the rate of ulceration (average onset, 6 +/- 1 days). Once ulceration occurred in animals treated with both topical and systemic ascorbic acid, the incidence of perforation and descemetocele formation was increased and that of healing was decreased. The time required for healing was not significantly altered by treatment (9.50 +/- 2.28 days for control eyes vs 5.75 +/- 2.78 days for treated eyes) (P greater than .05).

Animals↗

Age-related changes in protein conformation in bovine lens crystallins.

In order to investigate the conformational changes associated with the aging process, circular dichroism (CD), absorption and fluorescence measurements of bovine lens crystallins isolated from the nucleus of old (cow) and young (calf) animals are reported. Results show considerable differences in spectroscopic parameters between the young and old alpha-crystallin; however, no such changes were observed for beta- and gamma-crystallins. Age-related changes include an increased absorption in near-u.v. and decreased intensity in the far-u.v. region; near-u.v. circular dichroism shows a considerable difference, whereas the dichroism in far-u.v. remains the same. The decrease in tryptophan fluorescence of old alpha-crystallin is of the same magnitude as is the increase in non-tryptophan fluorescence. The fluorescence of the sulfhydryl (SH) specific probe, 2-(4'-maleimidylanilino) naphthalene-6-sulfonate, indicates that accessible (to the probe) SH groups of cow alpha-crystallin are fewer than those of calf, and they are also in a more polar environment. This study demonstrates that, with aging, alpha-crystallin undergoes a change in the tertiary structure involving tryptophan, tyrosine and cysteine residues. This conformational change has been explained by the suggestion that a large portion of the protein unfolds during the aging process, resulting in a change in interaction properties between the aromatic amino acid residues and between the residues and the peptide backbone. The unfolding is also associated with the accessibility, reactivity and spatial arrangement of these residues, including the cysteine by which aggregation or cross-linking of the protein is likely to occur.

Absorption↗

Role of singlet oxygen in the degradation of hyaluronic acid.

To investigate the effect of singlet oxygen on the molecular properties of hyaluronic acid, the polymer was irradiated in the presence of a dye sensitizer for singlet oxygen. Viscosity and circular dichroism techniques were used to monitor these changes. The relative viscosity of the polymer solution decreased steadily with increasing duration of irradiation, indicating an apparent decrease in molecular weight of hyaluronic acid. Circular dichroism measurements of the irradiated sample, however, did not show any appreciable change in the secondary structure, but do suggest that the generated singlet oxygen changes the tertiary structure and that this change is followed by a minor depolymerization.

Circular Dichroism↗

Spectroscopic studies on pepsin-solubilized vitreous and cartilage collagens.

Circular dichroism and the fluorescent probe, 2-p-toluidinyl-naphthalene-6-sulfonate, were used to compare the molecular properties of pepsin-solubilized vitreous collagen with cartilage and calfskin collagens. Type II vitreous and cartilage collagens have more hydrophobic regions along their molecular domain than does type I calfskin collagen. The rate of fibril growth is faster in type II collagens than in type I. The increased hydrophobicity of type II collagens is attributed to high carbohydrate content and compositional variations. Although the secondary structures of the three collagens do not differ significantly, differences in carbohydrate content, composition, and hydrophobic character may cause some variations in the tertiary structures. It is suggested that the tertiary structure plays an important role in the nature and rate of fibril growth. Differences between cartilage and vitreous collagen in fluorescence behavior, fibril growth, and melting temperature indicate that vitreous collagen may be a "special type II collagen."

Animals↗

Glycosaminoglycans: structure and interaction.

In the last few years, there has been considerable progress in the studies on glycosaminoglycans, a group of acidic polysaccharides present in the intercellular matrix of connective tissue. X-ray diffraction studies have indicated that these polymers can exist in the condensed phase in some helical form. Chiroptical and hydrodynamic measurements have provided significant information regarding the molecular conformation in solution and other physicochemical properties of the polymers. Studies related to the interaction properties of glycosaminoglycans with polypeptides, metal ions, and other molecules are numerous. This review covers mainly the results and their interpretations of both published and as yet unpublished material of the 1970s, but certain previous data are also included. A present-day concept regarding the structure and interaction properties of these molecules on the basis of various physicochemical measurements is presented. The biosynthesis and metabolism of glycosaminoglycans, and the structure of proteoglycans and glycoproteins, are not discussed.

Animals↗

Optical characteristics of carboxyl group in relation to the circular dichroic properties and dissociation constants of glycosaminoglycans.

Circular dichroism studies of glycosaminoglycans including chemically transformed heparins at various pH values reveal that carboxyl chromophore plays an important role in the dichroic behavior of the polymers. With decreasing pH, iduronic acid-containing glycosaminoglycans show increased negative ellipticity near 220 nm whereas the polymers containing glucuronic acid display enhanced negative dichroism near 230 nm and decreased negative dichroism around 210 nm. The pH-dependent optical properties have been utilized to determine the pKa values of uronic acid moieties. The acid strengths of the iduronic acid-containing glycosaminoglycans are inherently smaller than those of corresponding glucuronic acid-containing polymers. Glycosaminoglycans in which the amino sugars are linked with iduronic acid display a very weak n leads to pi* amide transition, or none. The rotational strength at 210 nm of these polymers is largely due to iduronic acid moieties. The CD variations above 200 nm with change in pH do not indicate any major conformational transition of the molecules but the difference between dermatan sulfate and heparin can be attributed to difference either in iduronic acid conformation or in intersaccharide linkages.

Carboxylic Acids↗

Conformational transition of hyaluronic acid: carboxylic group participation and thermal effect.

The chiroptical, viscosity and titration studies of hyaluronic acid in mixed organic/water solvent show a reversible conformational transition of the molecule depending upon pH, solvent composition, temperature, and molecular weight. Neither methylhyaluronate nor chondroitin undergoes conformational transition of this type. These results indicate that hydrogen bonding between the protonated carboxylic group and carbonyl oxygen of the acetamido group is directly involved in the conformational change. Results with chondroitin provide further support for the 4-fold helical structure that we have proposed for hyaluronic acid in mixed organic/water solvent. The thermal stability of the conformation has been studied under various pH values and solvent compositions.

Chemical Phenomena↗