Biomedical subjects
Publications and source records attributed to Alan E Rowan.
A series of mono-functionalized metallo-porphyrin polystyrenes have been synthesized using atom transfer radical polymerization and their self-assembling behavior was studied by electron microscopy showing that the polystyrene tail-length influences the aggregate architecture.
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A giant porphyrin disc (M(w)= 15 kDa) has been synthesized and its self-assembly behaviour at an interface studied by liquid STM which reveals the presence of huge domains (>400 x 400 nm2) of very well ordered and molecularly resolved columnar stacks.
The formation of micrometer-sized, highly ordered porphyrin rings on surfaces has been investigated. The porphyrin-based nanoarchitectures are formed by deposition from evaporating solutions through a surface dewetting process which can be tuned by variations in the substitution pattern of the molecules used, the coating of the surface and the conditions under which the evaporation takes place. Control over the combined self-assembly and surface dewetting results in nanorings possessing a defined internal architecture. The ordering of the molecules within the rings has been studied by a variety of microscopy techniques (TEM, AFM, fluorescence microscopy) and the exact ordering of the porphyrins within the rings has been quantified.
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The directional drying of a low-salt Tris-EDTA (TE)-buffer to give an alignment layer offers a simple, one-step, non-contact procedure for the construction of parallel liquid crystal displays (LCDs), which can be used to amplify the presence of DNA to scales visible to the naked eye, opening up possibilities for easy detection of bio recognition events.
The synthesis and aggregation behavior of cavity-containing facial amphiphiles is described. The molecules consist of a glycoluril-based rigid cavity functionalized with two water-soluble benzoate groups. By specific molecular recognition processes in water, the amphiphilic hosts self-assemble in a hierarchical process to form arrays of molecules. Depending on the counterions, these arrays can be assembled into well-defined aggregates of mesoscopic size. The size and shape of the aggregates can be tuned by variations in the size and substitution pattern of the cavities of the host molecules.
A novel donor-acceptor bisphthalocyanine (bis-Pc, 1) in which two different Pc units (Zn(II)-Pc and Ni(II)-Pc) are linked via vinylene spacers to the pseudopara positions of a central [2.2]paracyclophane moiety is described. The synthesis of 1 is achieved by two successive Heck reactions of pseudopara-divinyl[2.2]paracyclophane 9 with, sequentially, a zinc(II)- and a nickel(II)-iodophthalocyanine (4 and 5, respectively). The self-assembly ability of 1, which is the result of the complementary donor-acceptor character of its phthalocyanine units, has been assessed by a variety of techniques. It is revealed that 1 forms one-dimensional aggregates of nanometer-sized dimension, whereas equimolar mixtures of the donor and acceptor Pc subunits 2 and 3, although strongly interacting, do not give large arrays. The aggregates of 1 represent a novel type of supramolecular polymers based mainly upon donor-acceptor interactions.
Nature has evolved complex enzyme architectures that facilitate the synthesis and manipulation of the biopolymers DNA and RNA, including enzymes capable of attaching to the biopolymer substrate and performing several rounds of catalysis before dissociating. Many of these 'processive' enzymes have a toroidal shape and completely enclose the biopolymer while moving along its chain, as exemplified by the DNA enzymes T4 DNA polymerase holoenzyme and lambda-exonucleoase. The overall architecture of these systems resembles that of rotaxanes, in which a long molecule or polymer is threaded through a macrocycle. Here we describe a rotaxane that mimics the ability of processive enzymes to catalyse multiple rounds of reaction while the polymer substrate stays bound. The catalyst consists of a substrate binding cavity incorporating a manganese(III) porphyrin complex that oxidizes alkenes within the toroid cavity, provided a ligand has been attached to the outer face of the toroid to both activate the porphyrin complex and shield it from being able to oxidize alkenes outside the cavity. We find that when threaded onto a polybutadiene polymer strand, this catalyst epoxidizes the double bonds of the polymer, thereby acting as a simple analogue of the enzyme systems.
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Well-defined arrays of porphyrins attached to a rigid polyisocyanide backbone have been synthesized and their physical and optical properties studied. The helical polymers are rigidified by an inter-side chain hydrogen-bonded network and have an average mass of 1.1 x 10(6) Daltons and a polydispersity index of 1.3. Each of the polymer strands contains four columns of around 200 stacked porphyrins and has an overall length of 87 nm. The chromophores are arranged in a left-handed helical fashion along the polymer backbone. Photophysical studies show that at least 25 porphyrins within one column are excitationally coupled.
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The structure of the lipoplex formed from DNA and the sugar-based cationic gemini surfactant 1, which exhibits excellent transfection efficiency, has been investigated in the pH range 8.8-3.0 utilizing small-angle X-ray scattering (SAXS) and cryo-electron microscopy (cryo-TEM). Uniquely, three well-defined morphologies of the lipoplex were observed upon gradual acidification: a lamellar phase, a condensed lamellar phase, and an inverted hexagonal (H(II)) columnar phase. Using molecular modeling, we link the observed lipoplex morphologies and physical behavior to specific structural features in the individual surfactant, illuminating key factors in future surfactant design, viz., a spacer of six methylene groups, the presence of two nitrogens that can be protonated in the physiological pH range, two unsaturated alkyl tails, and hydrophilic sugar headgroups. Assuming that the mechanism of transfection by synthetic cationic surfactants involves endocytosis, we contend that the efficacy of gemini surfactant 1 as a gene delivery vehicle can be explained by the unprecedented observation of a pH-induced formation of the inverted hexagonal phase of the lipoplex in the endosomal pH range. This change in morphology leads to destabilization of the endosome through fusion of the lipoplex with the endosomal wall, resulting in release of DNA into the cytoplasm.
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The synthesis of a double-cavity porphyrin with interesting allosteric binding properties toward viologens (N,N'-disubstituted 4,4'-bipyridines) is described. The porphyrin host forms very strong 1:2 complexes with viologens, displaying a negative allosteric behavior. The first viologen guest binds exceptionally tight (K > 107 M-1), and the second guest binds much more weakly (DeltaDeltaG = 9-15 kJ mol-1). The allosteric effect, one of the highest reported so far, originates in structural changes upon binding the first ligand, closely following the sequential (or induced-fit) theory of allosteric interactions by Koshland, Némethy, and Filmer (the KNF-model).
A new type of giant amphiphilic molecule has been synthesized by covalently connecting a lipase enzyme headgroup to a maleimide-functionalized polystyrene tail (40 repeat units). The resulting biohybrid forms catalytic micellar rods in water.
Host molecules with U-shaped receptor cavities have been derivatized at their convex side with two n-hydrocarbon tails (1), two first-generation (2), and two second-generation (3) monodendritic hydrocarbon tails. Although hosts 1 and 2 display plastic-crystalline behavior, evidence suggests that host 3 forms a cubic liquid-crystalline phase. In this phase, molecules of 3 are arranged in spherical supramacromolecular assemblies, in which the receptor cavities are situated in the core and the hydrocarbon tails at the periphery. The 1:1 host-guest complex of 3 with methyl 3,5dihydroxybenzoate forms a similar liquid-crystalline phase, with the guest included in the core of the assemblies.