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Biomedical subjects

A R Khokhlov

Publications and source records attributed to A R Khokhlov.

At least 19 recordsLinked to original sources

Stoichiometric polyelectrolyte complexes of ionic block copolymers and oppositely charged polyions.

Micellization in dilute solutions of diblock copolymers with a polyelectrolyte and a hydrophilic nonionic blocks and oppositely charged polyions is studied using mean-field theory. In aqueous solutions the micelle core consists of the polyelectrolyte complex (PEC) while the corona is formed by hydrophilic blocks of the block copolymers. Describing PEC as a globule in the framework of the Lifshitz [Zh. Eksp. Teor. Fiz. 55, 2408 (1968)] globule theory we calculate the surface tension of the micellar core/solvent interface as a function of the polyion degree of ionization, solvent quality, and concentration of low-molecular-mass salt. The equilibrium aggregation number of starlike micelles formed by block copolymers and homopolymers of opposite charge at stoichiometric mixture compositions is found as a function of the system parameters. It is shown that micelles disintegrate upon addition of salt.

Journal Article↗

Mechanism of smectic arrangement of montmorillonite and bentonite clay platelets incorporated in gels of poly(acrylamide) induced by the interaction with cationic surfactants.

Structure transitions, induced by the interaction with the cationic surfactant cetylpyridinium chloride in nanocomposite gels of poly(acrylamide) with incorporated suspensions of the two closely related layered clays bentonite and montmorillonite, were studied. Unexpectedly, different behaviors were revealed. X-ray diffraction measurements confirm that, due to the interaction with the surfactant, initially disordered bentonite platelets arrange into highly ordered structures incorporating alternating clay platelets and surfactant bilayers. The formation of these smectic structures also in the cross-linked polymer gels, upon addition of the surfactant, is explained by the existence of preformed, poorly ordered aggregates of the clay platelets in the suspensions before the gel formation. In the case of montmorillonite, smectic ordering of the disordered platelets in the presence of the surfactant is observed only after drying the suspensions and the clay-gel composites. Rheology studies of aqueous suspensions of the two clays, in the absence of both surfactant and gel, evidence a much higher viscosity for bentonite than for montmorillonite, suggesting smaller clay-aggregate size in the latter case. Qualitatively consistent results are obtained from optical micrographs.

Journal Article↗

Shape transformations of protein-like copolymer globules.

Shapes of globules formed by amphiphilic multi-block-copolymers in a selective solvent are considered theoretically. We focus on copolymers consisting mostly of insoluble H-units forming large core surrounded by a shell of soluble P-blocks. It is shown that the globule becomes non-spherical when the effective shell tension is low enough. The resultant shape depends on the shell bending energy: it is prolate if this energy is larger than the elastic energy of the core, and oblate in the opposite case. The central result is the prediction of the formation of a surface pattern of fingers accompanying or even preempting the shape transition mentioned above. We elucidate and discuss the following finger morphologies: 1) nearly spherical knob; 2) a necklace of spherical beads extending away from the surface; 3) mostly cylindrical fingers; 4) large thorn-like fingers. The first 3 morphologies develop at equilibrium as the shell area increases (or, equivalently, the shell tension decreases). Considering the relevant kinetical aspects we show that formation of fingers is a nucleation and growth process, and that the energy of their equilibrium nucleation is likely to be high. Therefore, the finger formation may be delayed, and may actually occur in the regime where the plain spherical surface is metastable. It is the last morphology (thorn-like fingers) that characterizes the metastable regimes when the finger formation is controlled by a high activation energy. The universal features of the above predictions inviting experimental tests are discussed.

Computer Simulation↗

Stoichiometric polyelectrolyte complexes as comb copolymers.

The collapse behavior of a single comblike copolymer chain has been studied by Monte Carlo simulations. It has been supposed that the solvent is good for the side chains but the solvent quality for the backbone chain changes. It has been shown that depending on the structural parameters of the comb copolymer (the lengths of the backbone and side chains, grafting density of the side chains) various thermodynamically stable morphologies of the collapsed backbone chain can be realized. In addition to ordinary spherical globule we have observed elongated structures as well as necklace-like conformations. The proposed model can be used to describe conformational behavior of stoichiometric complexes between block copolymers with a polyelectrolyte short block and oppositely charged linear homopolymers.

Journal Article↗

Conformational dynamics of single molecules visualized in real time by scanning force microscopy: macromolecular mobility on a substrate surface in different vapours.

We describe a technique to visualize and effect in real time motion and conformational transitions of single macromolecules. Two steps are involved. First, scanning force microscopy (SFM) was applied to detect in situ conformational transitions of single polymer molecules adsorbed on a substrate surface. Secondly, these changes were induced by controlled variations of environmental conditions in a microscope environmental chamber. In particular, we have revealed that exposure of a substrate with adsorbed macromolecules to vapours of different nature was able to increase molecular mobility and to stimulate conformational transitions of the polymer chains on the surface. Realization of SFM observation in a variable vapour environment was not as difficult as in liquid media. Variations of the vapour composition affected the oscillation dynamics of the cantilever with the scanning probe only to a small extent, and did not impede continuation of the scanning procedure. In fact, the characteristic times of the observed conformational changes were large enough (minutes to dozens of minutes) for sampling images repeatedly. Although recording of an SFM image was slow and required several minutes, we were able to visualize step-by-step the successive stages of the slow conformational transformation of the macromolecules adhering to the substrate, i.e. to investigate a molecular response to the environment changes in real time. Here, we studied the reversible collapse-decollapse transitions of cylindrical poly(methacrylate)-graft-poly(n-butyl acrylate) brush-like macromolecules exposed to different vapours. Single macromolecules on mica tended to assume a compacted globular conformation when exposed to the vapour of compounds, which due to their amphiphilic nature adsorb on mica and lower the surface energy of the substrate (e.g. alcohols). By contrast, the macromolecules adopted extended two-dimensional worm-like conformations in the vapours of compounds having high values of surface tension (such as water). In our opinion, the reason for the observed tendency was a competition in spreading on the substrate surface between the macromolecules and the co-adsorbed vapour molecules. If the brush-like macromolecules succeeded in the spreading, they acquired an extended conformation. Otherwise they collapsed to globuli in order to reduce the surface area per macromolecule. Thus, the enhanced mobility of synthetic macromolecules on a substrate observed in a vapour environment in combination with the possibility to manipulate the macromolecular conformation via changes in a vapour phase and the ability to visualize the transitions of the macromolecules individually, provides challenging prospects for SFM studies on the dynamics of single molecules under applied external stimuli.

Journal Article↗

Conformation-dependent sequence design: evolutionary approach.

A new modification of evolutionary approach to sequence design of copolymers has been proposed. A model of step-by-step evolution of a two-letter ( HP) copolymer sequence has been studied by means of a coarse-grained Monte Carlo algorithm. The conditions for accepting a change in the primary sequence depend on the spatial conformation of HP-copolymer chain. This leads to a coupling between sequence and conformation and to formation of protein-like conformations and primary sequences (for some values of parameters of the model) independently of initial sequence and/or conformation. Simple theory describing these computer simulation observations is developed.

Algorithms↗

Statistics of copolymer sequences obtained by polymeranalogous reactions of homopolymer globules.

For the first time the macrokinetics of polymeranalogous reaction in a homopolymer globule is considered theoretically. Using mathematical apparatus of the theory of markovian stochastic processes we examined the statistical characteristics of the chemical structure of the emerging copolymers. It is shown that when the reaction is kinetically-controlled the sequence distribution of monomeric units in copolymer chains follows Bernoullian statistics. In the opposite regime, when the reaction is diffusion-controlled it is proved that the resulting primary structure is described by the Levy flight distribution. Such copolymers with nonmarkovian character of the alteration of units in macromolecules can not be synthesized in the bulk or in concentrated solutions by means of standard synthetic polymerization procedures.

Journal Article↗

Stability of dense hydrophobic-polar copolymer globules: regular, random and designed sequences.

Stability of dense globular structures formed by amphiphilic copolymers consisting of hydrophobic (insoluble) units and a small fraction of single polar (soluble) monomer units is considered in the mean-field approximation for different types of unit distributions along the chain. Polar (P) units are located in a relatively thin surface layer due to their strong repulsion from hydrophobic (H) monomer units. We compared globules formed by different copolymer sequences with the same gross numbers of P- and H-units: regular HP-sequences (P-units separated by equal H-blocks), random copolymers (uncorrelated positions of P-units, i.e. Flory distribution of H-block lengths), proteinlike (PL) sequences (designed sequences involving both long H-blocks dominating by total mass, and short blocks dominating by number). We showed that PL-globules are more stable (lower free energy) and are characterized by a higher temperature of the coil-to-globule transition when compared with the other sequences mentioned above. We also considered HP-H-copolymers consisting of one long and many short hydrophobic blocks; we showed that it is these sequences that yield the dense globules corresponding to the lowest free energy.

Journal Article↗

Molecular mass characterization of polymers with strongly interacting groups using gel permeation chromatography-light scattering detection.

This work is aimed at studying dilute solution behavior and developing techniques for the proper Mr characterization of polymers with strongly interacting groups. In particular, we have studied ionomers based on poly(dimethylcarbosiloxane) with carboxylic groups and hydrophobically modified polyacrylamide and its charged terpolymer. Gel permeation chromatography-light scattering (GPC-LS) study of organosilicon ionomers allowed us to follow molecular mass distribution evolutions during approximately a week that evidenced the gradual dissolution of clusters formed in bulk polymers. The rate of this process depends on the polymer composition and its preliminary treatment. Observed aggregates arre found to be stable during the procedure of chromatographic analysis. For characterization of hydrophobically modified polyacrylamide and its charged derivatives, we have used aqueous NaNO3-acetonitrile mixed solvent. Fluorescence spectroscopy with pyrene as a probe did not reveal any hydrophobic association in this solvent in contrast to aqueous solutions. Reversed-phase retention as well as polyelectrolyte exclusion were suppressed at GPC analysis. GPC-LC and classical LS methods gave consistent results for uncharged and weakly charged polymers. In the case of highly charged and highly hydrophobic terpolymers LS results evidenced association, while OPC-LC gave credible Mr values. We can conclude that in the last case, the observed association was weak enough to be disrupted in the coarse of chromatography.

Acrylic Resins↗

Coil-globule transition for regular, random, and specially designed copolymers: Monte Carlo simulation and self-consistent field theory.

The coil-globule transition has been studied for A-B copolymer chains both by means of lattice Monte Carlo (MC) simulations using bond fluctuation algorithm and by a numerical self-consistent-field (SCF) method. Copolymer chains of fixed length with A and B monomeric units with regular, random, and specially designed (proteinlike) primary sequences have been investigated. The dependence of the transition temperature on the AB sequence has been analyzed. A proteinlike copolymer is more stable than a copolymer with statistically random sequence. The transition is more sharp for random copolymers. It is found that there exists a temperature below which the chain appears to be in the lowest energy state (ground state). Both for random and proteinlike sequences and for regular copolymers with a relatively long repeating block, a molten globule regime is found between the ground state temperature and the transition temperature. For regular block copolymers the transition temperature increases with block size. Qualitatively, the results from both methods are in agreement. Differences between the methods result from approximations in the SCF theory and equilibration problems in MC simulations. The two methods are thus complementary.

Computer Simulation↗

Primary sequences of proteinlike copolymers: Levy-flight-type long-range correlations.

We consider the statistical properties of primary sequences of two-letter HP copolymers (H for hydrophobic and P for polar) designed to have water soluble globular conformations with H monomers shielded from water inside the shell of P monomers. We show, both by computer simulations and by exact analytical calculation, that for large globules and flexible polymers such sequences exhibit long-range correlations which can be described by Levy-flight statistics.

Biophysics↗

Two types of hydrophobic aggregates in aqueous solutions of chitosan and its hydrophobic derivative.

The aggregation phenomena in aqueous solutions of hydrophobically modified (HM) chitosan, containing 4 mol % of n-dodecyl side chains, were studied by viscometry and fluorescence spectroscopy with pyrene as a probe. The results are compared with those for unmodified chitosan. Surprisingly, fluorescence data reveal the appearance of intermolecular hydrophobic aggregates both in chitosan and in HM chitosan. Nevertheless, these polymers exhibit quite different rheological properties: upon the formation of aggregates the viscosity of HM chitosan sharply increases, while that of unmodified chitosan raises only slightly. The aggregation models for both chitosan and its hydrophobic derivative were proposed. It was shown that in solutions of HM chitosan two types of hydrophobic domains exist: hydrophobic domains typical for different associating polymers with hydrophobic side chains and hydrophobic domains inherent to chitosan itself.

Biopolymers↗

Thermodynamics of conformational ordering of iota-carrageenan in KCl solutions using high-sensitivity differential scanning calorimetry.

Thermodynamic properties of aqueous solutions of iota-carrageenan as affected by KCl (0.15-1.2 M) or iota-carrageenan (0.5-6 mg/mL) content were studied by high-sensitivity differential scanning calorimetry. The polysaccharide was found to undergo two consecutive cooperative conformational transitions, which can be represented by the scheme: [H2]2<-->2H2<-->4C where C is the random coil, H2 is the double helix, and [H2]2 is the double helix dimer. The first transition follows by the "all or none" mechanism. The profile of the second transition resembles that of a second-order phase transition. The parameter sigma (of order 1), estimated for this latter transition, suggests that the stacking effect in helices of iota-carrageenan is rather small. The cooperativity of the transition is mainly defined by the loop factor. Free energies of both transitions at 273 K were calculated as a function of salt concentration. These experimental data were found to agree with Manning's theory.

Calorimetry, Differential Scanning↗

Surface-induced DNA superhelicity.

Certain biopolymers, such as DNA, have a double-stranded twisted structure and frequently exhibit a supercoiled conformation. Over the past decade, extensive conformational analyses of different biopolymers have been performed using atomic force microscopy. In this technique, a necessary step in sample preparation is the adsorption of molecules on the surface, which could affect the chain conformation. Using a Monte Carlo simulation, we studied the adsorption process of circular semiflexible twisted double-stranded polymer chains on a solid surface with an emphasis on the conformational properties. We found that the conformation of an adsorbed chain strongly depends on the number of double-helical turns of the chain. Chains with weak twisting adsorbed on the surface assumes higher superhelical twisting, whereas the coiled state is seen in the bulk solution. After the adsorption, double-helical turns are accumulated in the adsorbed ("train") sections giving more conformational freedom to the nonadsorbed ("loop") sections. Chains with strong twisting show small conformational changes with adsorption. In both cases, superhelicity shows the opposite sign of writhing.

Algorithms↗

Nematic ordering of rigid rods in a gravitational field.

The isotropic-to-nematic transition in an athermal solution of long rigid rods subject to a gravitational (or centrifugal) field is theoretically considered in the Onsager approximation. The new feature emerging in the presence of gravity is a concentration gradient that coupled with the nematic ordering. For rodlike molecules this effect becomes noticeable at centrifugal acceleration g approximately 10(3)-10(4) m/s(2), while for biological rodlike objects, such as tobacco mosaic virus, the effect is important even for normal gravitational acceleration conditions. Rods are concentrated near the bottom of the vessel, which sometimes leads to gravity induced nematic ordering. The concentration range corresponding to phase separation increases with increasing g. In the region of phase separation the local rod concentration, as well as the order parameter, follow a step function with height.

Journal Article↗