Biomedical subjects

A M Breure

Publications and source records attributed to A M Breure.

13 recordsLinked to original sources

PubMed2006

Algal-bacterial interactions in metal contaminated floodplain sediments.

The aim of the present study was to investigate algal-bacterial interactions in a gradient of metal contaminated natural sediments. By means of multivariate techniques, we related the genetic structure (denaturing gradient gel electrophoresis, DGGE) and the physiological structure (community-level physiological profiling, CLPP) of the bacterial communities to the species composition of the algal communities and to the abiotic environmental variables, including metal contamination. The results revealed that genetic and physiological structure of the bacterial communities correlated with the species composition of the algal community, but hardly to the level of metal pollution. This must be interpreted as an indication for a strong and species-specific linkage of algal and bacterial species in floodplain sediments. Metals were, however, not proven to affect either the algal or the bacterial communities of the Dutch river floodplains.

Bacteria↗

PubMed2005

Foreword.

Explore the source record for details and available documents.

Biodiversity↗

PubMed2001

Application of a mechanistic desorption-biodegradation model to describe the behavior of polycyclic aromatic hydrocarbons in peat soil aggregates.

A procedure was developed to obtain three size fractions (2360 < d(p) < 1000, 1000 < d(p) < 710, and 710 < d(p) < 425 microm) of stable aggregates from Koopveen peat soil by application of an intense mixing regime prior to sieving of the soil material. The organic matter content, aggregation structure and the microstructure of these aggregates were determined and the particles were artificially contaminated with naphthalene and phenanthrene via a solvent phase. A nonlinear Freundlich sorption isotherm was determined for the naphthalene contaminated soil aggregates (n = 0.39; K(F) = 1.13 x 10(-2) m(1.17) kg(-0.39)). The applicability of a mathematical model, that describes sorption equilibrium, intraparticle mass-transfer, and nonlinear bacterial degradation kinetics, was tested by fitting results of dynamic desorption and biodegradation experiments, generated in this study and earlier work on the peat soil aggregates. The experimental data were described adequately although strong variations in the values of the fit parameter, the intra-particle porosity (0.30 < epsilon < 0.88), were found. This indicates the necessity of further investigations.

Biodegradation, Environmental↗

PubMed2001

Prediction of complete bioremediation periods for PAH soil pollutants in different physical states by mechanistic models.

Mass-transfer models and biodegradation models were developed for three theoretical physical states of polycyclic aromatic hydrocarbons (PAHs) in soil. These mechanistic models were used to calculate the treatment periods necessary for complete removal of the PAH pollutants from the soil under batch conditions. Results indicate that the bioremediation of PAHs in such systems is mainly mass-transfer limited. The potential for bioremediation as a treatment technique for PAH contaminated soils is therefore mainly determined by the mass-transfer dynamics of PAHs. Under mass-transfer limited conditions simplified mathematical models, based on the assumption of a zero dissolved PAH concentrations, can be used to predict the period of time needed for complete bioremediation.

Biodegradation, Environmental↗

PubMed1998

Effect of nonionic surfactants on naphthalene dissolution and biodegradation.

The effect of six nonionic surfactants, Igepal CA-720, Tergitol NPX, Triton X-100, PLE4, PLE10, and PLE23, on the dissolution rate of solid naphthalene was studied in stirred batch reactors. Results showed increased mass-transfer rates with increased surfactant concentrations up to 10 kg m-3. Dissolution experiments were adequatly described by a mechanistic mass-transfer model. Partitioning of naphthalene into the micelles and the diffusion coefficients of the micelles affected the dissolution rate most significantly. Combined dissolution and biodegradation experiments with Triton X-100 or PLE10 with naphthalene showed that the biomass-formation rate of Pseudomonas 8909N (DSM No. 11634) increased concomitantly with the mass-transfer rate under naphthalene-dissolution limited conditions up to surfactant concentrations of 6 kg m-3.

Biodegradation, Environmental↗

PubMed1998

Influence of hydrodynamic conditions on naphthalene dissolution and subsequent biodegradation.

The influence of hydrodynamic conditions on the dissolution rate of crystalline naphthalene as a model polycyclic aromatic hydrocarbon (PAH) was studied in stirred batch reactors with varying impeller speeds. Mass transfer from naphthalene melts of different surface areas to the aqueous phase was measured and results were modeled according to the film theory. Results were generalized using dimensionless numbers (Reynolds, Schmidt, and Sherwood). In combined mass transfer and biodegradation experiments, the effect of hydrodynamic conditions on the degradation rate of naphthalene by Pseudomonas 8909N was studied. Experimental results were mathematically described using mass-transfer and microbiological models. The experiments allowed determination of mass-transfer and microbiological parameters separately in a single run. The biomass formation rate under mass transfer limited conditions, which is related to the naphthalene biodegradation rate, was correlated to the dimensionless Reynolds number, indicating increased bioavailability at increased mixing in the reactor liquid. The methodology presented in which mass transfer processes are quantified under sterile conditions followed by a biodegradation experiment can also be adapted to more complex and realistic systems, such as particulate, suspended PAH solids or soils with intrapartically sorbed contaminants when the appropriate mass-transfer equations are incorporated.

Biodegradation, Environmental↗

PubMed1997

Competition of plasmid-bearing Pseudomonas putida strains catabolizing naphthalene via various pathways in chemostat culture.

Plasmid-carrying Pseudomonas putida strains degrade naphthalene through different biochemical pathways. The influence of various combinations of host bacteria and plasmids on growth characteristics and competitiveness of P. putida strains was studied in chemostat culture at a low dilution rate (D = 0.05 h-1) with naphthalene as the sole source of carbon and energy. Under naphthalene limitation, the plasmid-bearing strains degrading naphthalene that use catechol 1,2-dioxygenase for catechol oxidation (ortho pathway), were the most competitive. The strains bearing plasmids that control naphthalene catabolism via catechol 2,3-dioxygenase (meta pathway), were less competitive. Under these conditions the strain carrying plasmid pBS4, which encodes for naphthalene catabolism via gentisic acid, was the least competitive.

Bacterial Proteins↗

PubMed1996

Assessment of inhibition kinetics of the growth of strain P5 on pentachlorophenol under steady-state conditions in a nutristat.

A bacterium degrading pentachlorophenol (PCP) as the only source of carbon and energy was grown in a nutristat , i.e., a continuous culture with on-line measurement and control of the substrate concentration. We improved the PCP nutristat by incorporation of a personal computer with a proportional integral derivative (PID) algorithm for controlling the medium feed pump. The controlled value deviated from the average (set-point) value by 1% maximally. In the PCP nutristat (30 degrees C), the steady-state dilution rate, and hence, specific growth rate, showed a maximum value of 0.142 +/- 0.004 h-1 at set-point PCP concentrations between 37 and 168 microM. At PCP concentrations above 168 microM, the steady-state growth rate decreased because of inhibition. The growth yield coefficient was not seriously affected by the PCP concentration, suggesting that uncoupling was not the inhibitory mechanism. It was concluded that the PCP nutristat is very useful for establishing steady-state conditions that maintain growth-inhibitory PCP concentrations and high cell concentrations, conditions for which the chemostat is not suitable.

Bacteriological Techniques↗

PubMed1995

Influence of nonionic surfactants on bioavailability and biodegradation of polycyclic aromatic hydrocarbons.

The presence of the synthetic nonionic surfactants Triton X-100, Tergitol NPX, Brij 35, and Igepal CA-720 resulted not only in increased apparent solubilities but also in increased maximal rates of dissolution of crystalline naphthalene and phenanthrene. A model based on the assumption that surfactant micelles are formed and act as a separate phase underestimated the dissolution rates; this led to the conclusion that surfactants present at concentrations higher than the critical micelle concentration affect the dissolution process. This conclusion was confirmed by the results of batch growth experiments, which showed that the rates of biodegradation of naphthalene and phenanthrene in the dissolution-limited growth phase were increased by the addition of surfactant, indicating that the dissolution rates were higher than the rates in the absence of surfactant. In activity and growth experiments, no toxic effects of the surfactants at concentrations up to 10 g liter(sup-1) were observed. Substrate present in the micellar phase was shown to be not readily available for degradation by the microorganisms. This finding has important consequences for the application of (bio)surfactants in biological soil remediation.

Journal Article↗

PubMed1993

Growth and enrichment of pentachlorophenol-degrading microorganisms in the nutristat, a substrate concentration-controlled continuous culture.

The nutristat, a substrate concentration-controlled continuous culture, was used to grow pentachlorophenol (PCP)-degrading microorganisms. The PCP concentration control system consisted of on-line measurement of the PCP concentration in the culture vessel with a tangential filter and a flowthrough spectrophotometer. With PCP concentrations between 45 and 77 microM, a stable situation was established in the nutristat, with an average dilution rate of 0.035 +/- 0.003 h-1. Compared with those of fed-batch cultures and chemostat cultures, the growth rates of microorganisms in the PCP nutristat were significantly higher, leading to considerable time savings in the enrichment procedure. In addition, PCP accumulation to severe inhibitory levels in the culture is prevented because the set point determines the (maximum) PCP concentration in the culture. The use of the nutristat as a tool for the growth of bacteria that degrade toxic compounds is discussed.

Biodegradation, Environmental↗

PubMed1985

Role of anaerobic spore-forming bacteria in the acidogenesis of glucose: changes induced by discontinuous or low-rate feed supply.

A mineral salts medium containing 1% (w/v) glucose providing carbon-limited growth conditions was subjected to anaerobic acidogenesis by mixed populations of bacteria in chemostat cultures. The formation of butyrate was shown to be dependent on the presence of saccharolytic anaerobic sporeformers in the acid-forming population. By the use of pasteurized activated sludge as an inoculum a culture was obtained consisting solely of anaerobic sporeformers that gave rise to the formation of butyrate, acetate, hydrogen and carbon dioxide as the main fermentation products. No formation of propionate could be detected. In this culture, the role of sporulation was investigated by applying periods of starvation and a single-step lowering of dilution rate (shift-down). In an experiment using a mineral salts medium supplemented with 1% (w/v) glucose and 0.5% (w/v) casein hydrolysate formation of refractile forespores as well as cell lysis could be demonstrated after 6 h starvation. In mixed cultures, initially inoculated with non-pasteurized activated sludge, a regular interruption of feed supply for 1 h per day resulted in selection of non-sporulating anaerobes. The fermentation pattern changed to a production of propionate and acetate, with a concomitant reduction of gas production. Similar results were obtained with shift-down in dilution rate. A relative increase of propionate-forming bacteria was accomplished in a continuous culture experiment with regular two times 2-h periods of starvation per day. The propionate-forming microbial population consisted predominantly of curved rods, tentatively identified as Selenomonas sp.

Acetates↗

PubMed1982

Degradation patterns and intermediates in the anaerobic digestion of glucose: experiments with 14C-labeled substrates.

A mineral salts medium containing 1% (w/v) glucose was subjected to anaerobic digestion in an upflow reactor. Performance with respect to utilization of glucose was monitored by collection of fermentation gases and calculation of carbon mass balances. Sub-samples of bacterial suspensions from the upflow reactor were incubated with (U-14C)-glucose, (U-14C)-acetate, (2-14C)-propionate, (1-14C)-butyrate or 14C-carbonate. Individual radioactive products in samples from incubation mixtures were analysed by radio gas chromatography. Quantitatively, acetate and propionate were the only important intermediates in glucose degradation by glucose-adapted sludge, with acetate accounting for the largest part of intermediary fatty acid flux.

Acetates↗

PubMedDate not supplied

Microbiological aspects of surfactant use for biological soil remediation.

Biodegradation of hydrophobic organic compounds in polluted soil is a process involving interactions among soil particles, pollutants, water, and micro-organisms. Surface-active agents or surfactants are compounds that may affect these interactions, and the use of these compounds may be a means of overcoming the problem of limited bioavailability of hydrophobic organic pollutants in biological soil remediation. The effects of surfactants on the physiology of micro-organisms range from inhibition of growth due to surfactant toxicity to stimulation of growth caused by the use of surfactants as a co-substrate. The most important effect of surfactants on the interactions among soil and pollutant is stimulation of mass transport of the pollutant from the soil to the aqueous phase. This can be caused by three different mechanisms: emulsification of liquid pollutant, micellar solubilisation, and facilitated transport. The importance of these mechanisms with respect to the effect of surfactants on bioavailability is reviewed for hydrophobic organic pollutants present in different physical states. The complexity of the effect of surfactants on pollutant bioavailability is reflected by the results in the literature, which range from stimulation to inhibition of desorption and biodegradation of polluting compounds. No general trends can be found in these results. Therefore, more research is necessary to make the application of surfactants a standard tool in biological soil remediation.

Biodegradation, Environmental↗