Biomedical subjects

A Allouche

Publications and source records attributed to A Allouche.

11 recordsLinked to original sources

PubMed2006

Acetic acid-water interaction in solid interfaces.

The adsorption of acetic acid on a proton-ordered water ice surface is modeled using periodic plane-waves density-functional theory. The structures of acetic acid adsorbed as a monomer or oligomers, hydrated or not, are calculated through gradient optimization. The resulting quantum electronic density of states are compared to metastable impact electron spectroscopy (MIES) results and lead to selection of the most plausible structures of acetic acid on water ice. Hypotheses are formulated for the structure of the acid film growing on the ice surface including mainly cyclic dimers and hydrated forms. Adsorptions of single water molecules on acetic acid crystal surfaces are also studied after optimization of the acetic acid crystal bulk and surface structure. More comparisons with spectroscopic studies are proposed in the accompanying paper.

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PubMed2006

Interaction of acetic acid with solid water.

The interaction of acetic acid (AA, CH(3)COOH), with solid water, deposited on metals, tungsten and gold, at 80 K, was investigated. We have prepared acid/water interfaces at 80 K, namely, acid layers on thin films of solid water and H(2)O adlayers on thin acid films; they were annealed between 80 and 200 K. Metastable impact electron spectroscopy (MIES) and ultraviolet photoelectron spectroscopy UPS(HeII) were utilized to obtain information on the electronic structure of the outermost surface from the study of the electron emission from the weakest bound MOs of the acids, and of the molecular water. Temperature-programmed desorption (TPD) provided information on the desorption kinetics, and Fourier-transformed infrared spectroscopy (FTIR) provided information on the identification of the adsorbed species as well as on the water and acid crystallization. The results are compatible with the finding of ref 1 (preceding paper), made on the basis of DFT calculations, that AA adsorbs on ice as cyclic dimers. Above 120 K, a rearrangement of the AA dimers is suggested by a sharpening of the spectral features in the IR spectra and by spectral changes in MIES and UPS; this is attributed to the glass transition in AA around 130 K. Above 150 K the spectra transform into those characteristic for polycrystalline polymer chains. This structure is stable up to about 180 K; desorption of water takes place from underneath the AA film, and practically all water has desorbed through the AA film before AA desorption starts. There is no indication of water-induced deprotonation of the acid molecules. For the interaction of H(2)O molecules adsorbed on amorphous AA films, the comparison of MIES with the DFT results of ref 1 shows that the initial phase of exposure does not lead to the formation of a top-adsorbed closed water film at 80 K. Rather, the H(2)O molecules become attached to or incorporated into the preexisting AA network by H bonding; no water network is formed in the initial stage of the water adsorption. Also under these conditions no deprotonation of the acid can be detected.

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PubMed2005

Hydrogen adsorption on graphite (0001) surface: a combined spectroscopy-density-functional-theory study.

The adsorption of H/D atoms on the graphite (0001) surface is investigated by means of both high-resolution electron-energy loss spectroscopy (HREELS) and periodic first-principle density-functional theory. The two methods converge towards two modes of adsorption: adsorption in clusters of about four hydrogen atoms and adsorption in pairs of atoms on contiguous carbon sites. The desorption energies estimated from the calculated dissociation energies range from 8 to 185 kJ mol(-1) leading to an estimated surface coverage at saturations of 30-44 at. %. These results are compared with previous thermal desorption spectroscopy results. New HREEL signal assignments are proposed based on quantum calculations.

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PubMed2005

Interaction of formic acid with solid water.

The interaction of formic acid (HCOOH) with solid water, deposited on tungsten at 80 K, was investigated. We have prepared and annealed formic acid (FA)/water interfaces (FA layers on thin films of solid water and H(2)O adlayers on thin FA films). Metastable impact electron spectroscopy and ultraviolet photoemission spectroscopy (He I and II) were utilized to study the electron emission from the 10a' to 6a' molecular orbitals (MOs) of FA, and the 1b(1), 3a(1), and 1b(2) MOs of H(2)O. These spectra were compared with results of density-functional theory calculations on FA-H(2)O complexes reported in Ref. 14 [A. Allouche, J. Chem. Phys. 122, 234703(2005), (preceding paper)]. Temperature programmed desorption was applied for information on the desorption kinetics. Initially, FA is adsorbed on top of the water film. The FA spectra are distorted with respect to those from FA monomers; it is concluded that a strong interaction exists between the adsorbates. Even though partial solvation of FA species takes place during annealing, FA remains in the top layer up to the desorption of the water film. When H(2)O molecules are offered to FA films at 80 K, no water network is formed during the initial stage of water exposure; H(2)O molecules interact individually via H bonds with the formic acid network. Experiment and theory agree that no water-induced deprotonation of the formic acid molecules takes place.

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PubMed2005

Quantum studies of hydrogen bonding in formic acid and water ice surface.

The structure and spectroscopy (electronic and vibrational) of formic acid (HCOOH) dimers and trimers are investigated by means of the hybrid (B3LYP) density-functional theory. Adsorption of single and dimer HCOOH on amorphous water ice surface is modeled using two different water clusters. Particular attention has been given to spectroscopic consequences. Several hypotheses on formic acid film growing on ice and incorporation of a single water molecule in the formic acid film are proposed.

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PubMed2004

Electron delocalization by polar molecules: interaction of Na atoms with solid ammonia films studied with MIES and density functional theory.

The interaction of Na and NH(3) on tungsten was studied with metastable impact electron spectroscopy under UHV conditions. NH(3)(Na) films were grown at 90(+/-10) K on tungsten substrates and exposed to Na(NH(3)). No Na-induced reaction involving NH(3) takes place. At small Na exposures a Na-induced shift of the NH(3) spectral features is seen, in parallel with a decrease of the surface work function. At larger exposures three 3sNa-related spectral structures are seen, two of them at energetic positions different from that found for Na on metals or semiconductors. The main additional peak is attributed to delocalized Na species. A small additional feature is attributed to simultaneous ionization and excitation of partially ammoniated Na(2) species. The results are compared with density functional theory calculations which suggest that the 3sNa emission at small exposures appears to originate mainly from delocalized 3sNa electrons; they are located far from the Na species and become stabilized by solvent molecules. When depositing NH(3) molecules onto Na films, metalliclike Na patches and delocalized Na species coexist. The delocalization of 3sNa is seen up to T=130 K where the NH(3) species desorb.

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PubMed2004

Adsorption, diffusion, and recombination of hydrogen on pure and boron-doped graphite surfaces.

Boron inserted as impurity by substitution of carbon atoms in graphite is known to modify the reactivity of the surface in interaction with hydrogen. Boron induces a better H retention capability in graphite while it makes easier the recombination into molecular hydrogen under heating in thermal-desorption experimental conditions. It has already been calculated that boron modifies the electronic structure of the surface, which results in an increase of the adsorption energy for H. This result seems in good agreement with the better retention for H in doped graphite, but contradictory with the easier recombination observed. The aim of this work is to dismiss this contradiction by elucidating the modifications induced by boron in the recombination mechanism. We studied the diffusion of H on pure and boron-doped graphite in the density functional theory framework. We determined a diffusionlike mechanism leading to molecular hydrogen formation. Finally, we have shown the fundamental modifications induced by boron on the [0001] graphite surface reactivity. From these calculations it stands out that recombination is the result of desorption on pure graphite and diffusion on B-doped surfaces, while the activation energy for the rate limiting step is half reduced by boron. The results are compared to experimental observations. The connection between the cluster and periodic quantum modes for graphite is also discussed.

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PubMed2004

Electron solvation by polar molecules: the interaction of Na atoms with solid methanol films studied with MIES and density functional theory calculations.

The interaction of Na atoms with CH(3)OH films was studied with metastable impact electron spectroscopy (MIES) under UHV conditions. The films were grown at 90(+/-10) K on tungsten substrates and exposed to Na. Na-induced formation of methoxy (CH(3)O) species takes place, and Na atoms become ionized. At small Na exposures the outermost solvent layer remains largely intact as concluded from the absence of MIES signals caused by the reaction products. However, emission from CH(3)O, located at the film surface, occurs at larger exposures. In the same exposure range also Na species can be detected at the surface. The spectral feature from 3s Na ionization occurs at an energetic position different from that found for metals or semiconductors. The results are compared with density functional theory calculations [see Y. Ferro, A. Allouche, and V. Kempter, J. Chem. Phys. 120, 8683 (2004), preceding paper]. Experiment and theory agree in the energetic positions of the main spectral features from the methanol and sodium ionization. The calculations suggest that the 3s Na emission observed experimentally originates from solvated 3s electrons which are located far from the Na core and become stabilized by solvent molecules. The simultaneous emergence of emission from CH(3)O and from solvated 3s electrons suggests that the delocalization and, consequently, the solvation play an important role in the Na-induced formation of CH(3)O from CH(3)OH.

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PubMed2004

Electron solvation by highly polar molecules: density functional theory study of atomic sodium interaction with water, ammonia, and methanol.

This study further extends the scope of a previous paper [Y. Ferro and A. Allouche, J. Chem. Phys. 118, 10461 (2003)] on the reactivity of atomic Na with water to some other highly polar molecules known for their solvation properties connected to efficient hydrogen bonding. The solvation mechanisms of ammonia and methanol are compared to the hydration mechanism. It is shown that in the case of ammonia, the stability of the solvated system is only ensured by electrostatic interactions, whereas the methanol action is more similar to that of water. More specific attention is given to the solvation process of the valence 3s Na electron. The consequences on the chemical reactivity are analyzed: Whereas ammonia is nonreactive when interacting with atomic sodium, two chemical reactions are proposed for methanol. The first process is dehydrogenation and yields methoxy species and hydrogen. The other one is dehydration and the final products are methoxy species, but also methyl radical and water. The respective roles of electron solvation and hydrogen bonds network are analyzed in detail in view of the density of states of the reactive systems.

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PubMed2001

Cyanoacetylene adsorption on amorphous and crystalline water ice films: investigation through matrix isolation and quantum study.

The structure and energy properties of the 1:1 complexes formed between cyanoacetylene and H2O (D2O) are investigated using FT-IR matrix isolation spectroscopy and ab initio calculations at the MP2/ 6-31G(d,p) level. Cyanoacetylene adsorption and desorption on amorphous ice film are monitored by FT-IR using the temperature-programmed desorption method. In an argon matrix, two types of 1:1 complexes are observed. The first one corresponds to the NH structure, which involves a hydrogen bond with the terminal nitrogen of cyanoacetylene. The second corresponds to the HO form, which involves a hydrogen bond from the cyanoacetylene to the oxygen of water. This last complex is the more stable (DeltaE = -8.1 kJ/mol.). As obtained in argon matrixes, two kinds of adsorption site are observed between HC3N and ice. The first one, stable between 25 and 45 K is characterized by a nu(OH) shift similar to the one observed in matrix for the NH complex. The second, stable at higher temperatures (between 45 and 110 K), corresponds to an interaction with the dangling oxygen site of ice and is similar to the HO complex observed in matrix. From theoretical calculations (DFT method combined with a plane wave basis set and ultrasoft pseudopotentials), it is shown that, for this adsorption site, the HC3N moiety is flattened on the ice surface and stabilized by a long-distance interaction ( approximately 3 A) between one dangling OH and the pi system of the C triple bond C triple bond. The HC3N desorption occurs between 110 and 140 K, and the associated desorption energy is 39 kJ/mol. This value is in good agreement with the first principle calculation based on density functional theory and ultrasoft pseudopotentials (34 kJ/mol). These calculations confirm the electrostatic nature of the interaction forces. A small amount of cyanoacetylene is incorporated into the bulk and desorbs at the onset of the ice crystallization near 145 K. In these two kinds of experiments, HC3N acts as both an electrophilic and a nucleophilic molecule.

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PubMed1985

[Lengthening osteotomy of the femoral neck with transposition of the greater trochanter in acquired coxa vara].

The main problem in acquired coxa vara is related to shortening of the femoral neck and upward displacement of the greater trochanter. Using the Wagner technique, the authors have performed an intertrochanteric osteotomy in five adolescents with transfer of the greater trochanter to lengthen the femoral neck. The technique is described. The early results are encouraging.

Adolescent↗